SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G10710 | AT | Annotation by Michelle Graham. TAIR10: INVOLVED IN: chromosome segregation, cell division; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Centromere protein Cenp-O (InterPro:IPR018464); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3379619-3382648 FORWARD LENGTH=312 | SoyBase | E_val: 7.00E-145 | ISS |
| GO:0006661 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process | SoyBase | N/A | ISS |
| GO:0007059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome segregation | SoyBase | N/A | ISS |
| GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
| GO:0000775 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromosome, centromeric region | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| PF09496 | PFAM | Cenp-O kinetochore centromere component | JGI | ISS | |
| UniRef100_I1K938 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K938_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q01LX6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0145C02.4 protein n=3 Tax=Oryza sativa RepID=Q01LX6_ORYSA | SoyBase | E_val: 9.00E-145 | ISS |
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Glyma06g08010 not represented in the dataset |
Glyma06g08010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g07960 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g076400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g08010.2 sequence type=transcript gene model=Glyma06g08010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTGGGTCAGCACTACGCACACTTTTACACCAATTGCATTGGAAGAATGCATCACCGCGTTGTGTTGTGATTGAAAATGGAGAGCGATGTTGAAGAATCTATGCGGAAGAGGCCCAGAAAATATCCTTTCTCCGCCGATTCATCCTCTCGCAAGCAATTTGAACAATATTCTGGACGGACATTTGCAATTATGGGGGAAGTGAATTTTATGCAAGATGATGATAATCGTTTGGAGATTACCCGAACTAAATTTGGAAGTTTGCTTAAAAGACATGGAGATTTGACAGAGCGGCTTGCTAGGGATTCTGACAAGATAATATTTGAGCGTCTACAGAAGGAGTTTGAAGCTGCACGAGCTTCTCAAACTGAAGAGATATGTTTAGACGGGGAAGAGTGGAATGATGGTCTACTAGCTACAATAAGAGAGCGGGTGCATATGGAGGCGGACAGAAAAGCAATGCAAGGGGATGCGGACATATTAGCATGTCCCCTGGAAAAAATTACATATAAAATTGGAAACAAGGTAATTTGCTGTTTGGAAGGGGCAAGAATCGGCGTACAATATGAGACATCGTTTGCTGGTGAACCTTGTGAGTTTTACCATTGTGTGCTGGAAAGCAAGTCATTTCTTGAAAAGATGACTGTCCTTGAACACACAGTTCCATTTTTCCTGCCAATACGAGAAATAGAAAATGATCTCCATTCATCCAATGCAATGAAACTCATAGATCATGTTGGAGATCTATTGCAGGCTTTTGTGGATAGACGGGAACAGGTAGATTGCCCATGTCAGACTTATAAAGGAGCTGTATGGAAATCAGATTAGAGAGCTGTATCATAGCCTTCCCTACCATATGGTCGAATTTGTATTAGATGATTCTGATTGCAAGGTGACAGTCAGCCTTAGATATGCAGATCTCATTTCGGTGCTTCCAACTCGAATTTCAGTGCTAGCCTGGCCTATGTTCAATAAAAATACTATGAGTAGGAAGGAAGATGGACTCTCGGGAAGTCATTCTTCCCCAATTCGCCTAACATATGCAGAAGATGCCTTACGAACCATGAGTTTACCCGAAGCATATGCAGAGATTGTATTAAACTTACCACAGGCGATTCGGCAGACGTATCATCAAAAAGCCACCGCTTAGAGCTTTGCCCTTTCAGTAGCCTAGATGCATCTGTAAAAATTCTTGGTAGAGATGTTAAATATTAGAAAAACAACTTCAGAATTATTACCTATTTACCTAGTCAAATTGCTCAGGTTGAGTTCATTTTGCTGTAATATTGTCATATAGCATTTAGCATTTGTACTTCGGCCTCTCTGGCCTCGTTATTCCTTCAATACCTACTCCGGTGTCTTGTATCATTAATACAACAGGGCTAGGTTTACATCTATTCAAACTGCTGTCATTCATCTTTTCTTCATAATTCAATATGTATATAATTTGATTTCATATAAGTTCCATCTTTTTTACATGGCAAGCAAAAATGGCAAGTATGAAG
>Glyma06g08010.1 sequence type=CDS gene model=Glyma06g08010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAGCGATGTTGAAGAATCTATGCGGAAGAGGCCCAGAAAATATCCTTTCTCCGCCGATTCATCCTCTCGCAAGCAATTTGAACAATATTCTGGACGGACATTTGCAATTATGGGGGAAGTGAATTTTATGCAAGATGATGATAATCGTTTGGAGATTACCCGAACTAAATTTGGAAGTTTGCTTAAAAGACATGGAGATTTGACAGAGCGGCTTGCTAGGGATTCTGACAAGATAATATTTGAGCGTCTACAGAAGGAGTTTGAAGCTGCACGAGCTTCTCAAACTGAAGAGATATGTTTAGACGGGGAAGAGTGGAATGATGGTCTACTAGCTACAATAAGAGAGCGGGTGCATATGGAGGCGGACAGAAAAGCAATGCAAGGGGATGCGGACATATTAGCATGTCCCCTGGAAAAAATTACATATAAAATTGGAAACAAGGTAATTTGCTGTTTGGAAGGGGCAAGAATCGGCGTACAATATGAGACATCGTTTGCTGGTGAACCTTGTGAGTTTTACCATTGTGTGCTGGAAAGCAAGTCATTTCTTGAAAAGATGACTGTCCTTGAACACACAGTTCCATTTTTCCTGCCAATACGAGAAATAGAAAATGATCTCCATTCATCCAATGCAATGAAACTCATAGATCATGTTGGAGATCTATTGCAGGCTTTTGTGGATAGACGGGAACAGGTCAGACTTATAAAGGAGCTGTATGGAAATCAGATTAGAGAGCTGTATCATAGCCTTCCCTACCATATGGTCGAATTTGTATTAGATGATTCTGATTGCAAGGTGACAGTCAGCCTTAGATATGCAGATCTCATTTCGGTGCTTCCAACTCGAATTTCAGTGCTAGCCTGGCCTATGTTCAATAAAAATACTATGAGTAGGAAGGAAGATGGACTCTCGGGAAGTCATTCTTCCCCAATTCGCCTAACATATGCAGAAGATGCCTTACGAACCATGAGTTTACCCGAAGCATATGCAGAGATTGTATTAAACTTACCACAGGCGATTCGGCAGACGTATCATCAAAAAGCCACCGCTTAG >Glyma06g08010.2 sequence type=CDS gene model=Glyma06g08010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAGCGATGTTGAAGAATCTATGCGGAAGAGGCCCAGAAAATATCCTTTCTCCGCCGATTCATCCTCTCGCAAGCAATTTGAACAATATTCTGGACGGACATTTGCAATTATGGGGGAAGTGAATTTTATGCAAGATGATGATAATCGTTTGGAGATTACCCGAACTAAATTTGGAAGTTTGCTTAAAAGACATGGAGATTTGACAGAGCGGCTTGCTAGGGATTCTGACAAGATAATATTTGAGCGTCTACAGAAGGAGTTTGAAGCTGCACGAGCTTCTCAAACTGAAGAGATATGTTTAGACGGGGAAGAGTGGAATGATGGTCTACTAGCTACAATAAGAGAGCGGGTGCATATGGAGGCGGACAGAAAAGCAATGCAAGGGGATGCGGACATATTAGCATGTCCCCTGGAAAAAATTACATATAAAATTGGAAACAAGGTAATTTGCTGTTTGGAAGGGGCAAGAATCGGCGTACAATATGAGACATCGTTTGCTGGTGAACCTTGTGAGTTTTACCATTGTGTGCTGGAAAGCAAGTCATTTCTTGAAAAGATGACTGTCCTTGAACACACAGTTCCATTTTTCCTGCCAATACGAGAAATAGAAAATGATCTCCATTCATCCAATGCAATGAAACTCATAGATCATGTTGGAGATCTATTGCAGGCTTTTGTGGATAGACGGGAACAGGTAGATTGCCCATGTCAGACTTATAAAGGAGCTGTATGGAAATCAGATTAG
>Glyma06g08010.1 sequence type=predicted peptide gene model=Glyma06g08010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESDVEESMRKRPRKYPFSADSSSRKQFEQYSGRTFAIMGEVNFMQDDDNRLEITRTKFGSLLKRHGDLTERLARDSDKIIFERLQKEFEAARASQTEEICLDGEEWNDGLLATIRERVHMEADRKAMQGDADILACPLEKITYKIGNKVICCLEGARIGVQYETSFAGEPCEFYHCVLESKSFLEKMTVLEHTVPFFLPIREIENDLHSSNAMKLIDHVGDLLQAFVDRREQVRLIKELYGNQIRELYHSLPYHMVEFVLDDSDCKVTVSLRYADLISVLPTRISVLAWPMFNKNTMSRKEDGLSGSHSSPIRLTYAEDALRTMSLPEAYAEIVLNLPQAIRQTYHQKATA* >Glyma06g08010.2 sequence type=predicted peptide gene model=Glyma06g08010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESDVEESMRKRPRKYPFSADSSSRKQFEQYSGRTFAIMGEVNFMQDDDNRLEITRTKFGSLLKRHGDLTERLARDSDKIIFERLQKEFEAARASQTEEICLDGEEWNDGLLATIRERVHMEADRKAMQGDADILACPLEKITYKIGNKVICCLEGARIGVQYETSFAGEPCEFYHCVLESKSFLEKMTVLEHTVPFFLPIREIENDLHSSNAMKLIDHVGDLLQAFVDRREQVDCPCQTYKGAVWKSD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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