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Report for Sequence Feature Glyma06g07966

Feature Type:gene_model
Chromosome:Gm06
Start:5866113
stop:5874254
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g07966
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31430AT Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:15248510-15251945 FORWARD LENGTH=485 SoyBaseE_val: 1.00E-44ISS
GO:0000956GO-bp Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
UniRef100_Q01KL2UniRef Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0147J19.13 protein n=1 Tax=Oryza sativa RepID=Q01KL2_ORYSA SoyBaseE_val: 7.00E-21ISS
UniRef100_UPI000233A18BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A18B related cluster n=1 Tax=unknown RepID=UPI000233A18B SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g07966
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g07966 not represented in the dataset
Glyma06g07966 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g07966
ParalogEvidenceComments
Glyma04g07921 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g07966 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g075900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g07966
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g07966
>Glyma06g07966.2   sequence type=transcript   gene model=Glyma06g07966   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAATCACAAGAGGCAACATTTTTCCTGGCCCACACAACACACACTGACGATAAAAACAAATATTAAAAGAAAAAAGTTAAAAATAAAAAACGCAATAAACTGAAGATAACCGCTACAACAATCAAACTCGGCGTCTGTTTCTGGGAAATAAGAAGAGAAGAGTGAAGTTAAGTGGTGTTTTTGGAACTGAAAATTTGAACTCTGCAACGAAAACAGAAGCACTTTCCCACGTGCTTCGATGGCTTCCGTTCCCGGATCTCGATCCGCCGGCAAAATTGTCCGCACGCGCCGGAGCGCAGCCGCAAGGAGTCGCACCCCCTACGACCGCCCCGCGCCGCCGCCGCCGCCGCCGGAGCCTCCGAGCCCTAATTGGATCTCTCGTTTCGTTATCTCTCCCTCGCGTTTCATTGCTTCTGGCGCCGGAAAAATCTTCTCCTCTGTTTTGGATCTCGATAATTCTCCTTCTGATTCTTCCTCTGCTACGTCTTCTCATTCCTCTTCCGCTAACGATTCCGATGCTGAGGAAGTTGGTACTTTCGATGATGAAAATGATAACCCTTCTGAAGGTGATGTGGCATTGAGCAAGCCATGTGTTGGGAATAGCAAAAGCAAGCATATGATTGAGCAACTACTTATGAAGGAGTCATTCTCAAGGGAAGAATGTGATAGGCTGATAAAAATAATAAGATCAAGAGTGGTAGATCCTGCAAATGATGATGATGGGGATAAGAGGCCAACGGATATACCCAACAAGATTTTTGGAAGTGATTCACCTGAGCTCCATAGTGCTGCCATTATGGAGGCAAAGAAATGGCTGCGGGAAAAGAAGTCAGGTTTAGATACAAATTCAGATATAGGTTATGGAAGTCCTAGTTTGAATTTGGTTGCATTACCACAAGACCCCAAAGATGAAGGATCACCAGTGGATGTGGCTAAGTTGTATATGCGCACACGCCCTCCATGGGCATCACCTTCCATAGACCATACTAAACCTCAAACACCATCTGGAATTCAGCTATTTAAAGAAGAAACACCATATCTATTTGGCAACAATTCTACACCACCCTCCAAGTTGAAAAGGGATTCTGCTGCTACTGGTTCATGGAGTATTCAGGATGAAATACGAAGAGTAAGATCCAGGGCAACAGAGGATTTGCTTAGATCACTTCCATCCTCAAAAATTGATTGGTCTGCATTTGCCATGGAGAATAAAAATAATGTAAACTCTTCAGCTATTGAAAATATTGGAGCTAGTTTGGGAGAGAGAGTACACAATTCAACAAATTTAGTGGATGCATCTGCGAACTTGGCCAGAGGATTAGGTTCTCAGGTCTCTCCAGATTTGGATAGTAAACTAGATGAGTTCCAACCTGAATCTGTGCTGTCTAATCCAGTTAACATTAATTTTGAACAGAATCAGGGCTCTGTTGCTGTTCAGCAGACCAGAGGTACACAAGATGGCGGCGAAATAACTACTTCAGGACTAAGAGATGGGTCCTCGGATGATATGCACAGGGATGGCGGTCTGGTTAAAGTCAATGGCATCAGTGACACAAATGGGCCTGGTCATCAGCTAGATTCTGTTGAAGAAACTAGAGAAGCAATAAATTCTAGATTACAAGATAGTAACCACTTAGTAATCAAAGAGAAGGTTAGAGCAGAAGATGCATTAGCAAATGGTTTTCCCTCTTCAGAGCCAAGTTTCAATCCAGGGCAGGTTATTGAACAGAGCACAAAAACATTGGACAACAAACCTAATACGACTGATTCAAGTCAGGAAAGGACAGCTCAGGGTCTTGAGCAAGAGGAGTGTCAGACGTTGCGTGAATCAGCGGAGGTGCCTGATGTGATTGGGGACGACTCCGTTGCTGGCGGTGTTGTCTCTGGTTCACAGAACAGTTCCAGTGTGTATGAGGTTCAGCCGGGTGTAGAATCAGGCTTGTCAACCACACCAACTAGCATTGCTAAGCAAAAGGGAAGAAGAATTGCAACCAGATACAACAGAAGGGGCAGGGGCAAGGGTGTCAAATGATGCCTGTTGTATTATGTATGTTAAATTGTAAGTCACTGTTAGCTTAGAAAGTATAGGGATTCTGCAGGTCATTTGTTGTGAGATTAATAATATTCACGAATGAGTCTACGTCAACTTAGACAGGTTTATTTTTTTCTTTCATTTGTTCTCTTTTTTTTTGGTGATTACGTTCAGGGAAATCAGGTTCAGGAATTGGAAATGTATTTGCTGTATAAATAGTTAAATTAGCGACATTTTTTTTTTACCTAGTTAACTAGGTAACATGGATTTATGACATGCACGAACATGTGCAGCCTGAATGGTAACACTGGTCCTTGCACTAGCATTCTCTATGAGGCTCCTCTAGTGAATCATAATATTTTGTAACATCAAAGTACTCGAATTAGTTTGAGTTTGATGACTAGAAAGGTTTTTGTATGCATCGCTTTGGAATCAGGAATTTATAATGAGGATTTACGCACATTGTTTAACTTAAATTCTCAGGTACATAGTTTGGTTTACCAGGTTTAAGAGGAAAGG
Coding sequences of Glyma06g07966
>Glyma06g07966.1   sequence type=CDS   gene model=Glyma06g07966   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCGTTCCCGGATCTCGATCCGCCGGCAAAATTGTCCGCACGCGCCGGAGCGCAGCCGCAAGGAGTCGCACCCCCTACGACCGCCCCGCGCCGCCGCCGCCGCCGCCGGAGCCTCCGAGCCCTAATTGGATCTCTCGTTTCGTTATCTCTCCCTCGCGTTTCATTGCTTCTGGCGCCGGAAAAATCTTCTCCTCTGTTTTGGATCTCGATAATTCTCCTTCTGATTCTTCCTCTGCTACGTCTTCTCATTCCTCTTCCGCTAACGATTCCGATGCTGAGGAAGTTGGTACTTTCGATGATGAAAATGATAACCCTTCTGAAGGTGATGTGGCATTGAGCAAGGGGCTCCAGCCATGTGTTGGGAATAGCAAAAGCAAGCATATGATTGAGCAACTACTTATGAAGGAGTCATTCTCAAGGGAAGAATGTGATAGGCTGATAAAAATAATAAGATCAAGAGTGGTAGATCCTGCAAATGATGATGATGGGGATAAGAGGCCAACGGATATACCCAACAAGATTTTTGGAAGTGATTCACCTGAGCTCCATAGTGCTGCCATTATGGAGGCAAAGAAATGGCTGCGGGAAAAGAAGTCAGGTTTAGATACAAATTCAGATATAGGTTATGGAAGTCCTAGTTTGAATTTGGTTGCATTACCACAAGACCCCAAAGATGAAGGATCACCAGTGGATGTGGCTAAGTTGTATATGCGCACACGCCCTCCATGGGCATCACCTTCCATAGACCATACTAAACCTCAAACACCATCTGGAATTCAGCTATTTAAAGAAGAAACACCATATCTATTTGGCAACAATTCTACACCACCCTCCAAGTTGAAAAGGGATTCTGCTGCTACTGGTTCATGGAGTATTCAGGATGAAATACGAAGAGTAAGATCCAGGGCAACAGAGGATTTGCTTAGATCACTTCCATCCTCAAAAATTGATTGGTCTGCATTTGCCATGGAGAATAAAAATAATGTAAACTCTTCAGCTATTGAAAATATTGGAGCTAGTTTGGGAGAGAGAGTACACAATTCAACAAATTTAGTGGATGCATCTGCGAACTTGGCCAGAGGATTAGGTTCTCAGGTCTCTCCAGATTTGGATAGTAAACTAGATGAGTTCCAACCTGAATCTGTGCTGTCTAATCCAGTTAACATTAATTTTGAACAGAATCAGGGCTCTGTTGCTGTTCAGCAGACCAGAGGTACACAAGATGGCGGCGAAATAACTACTTCAGGACTAAGAGATGGGTCCTCGGATGATATGCACAGGGATGGCGGTCTGGTTAAAGTCAATGGCATCAGTGACACAAATGGGCCTGGTCATCAGCTAGATTCTGTTGAAGAAACTAGAGAAGCAATAAATTCTAGATTACAAGATAGTAACCACTTAGTAATCAAAGAGAAGGTTAGAGCAGAAGATGCATTAGCAAATGGTTTTCCCTCTTCAGAGCCAAGTTTCAATCCAGGGCAGGTTATTGAACAGAGCACAAAAACATTGGACAACAAACCTAATACGACTGATTCAAGTCAGGAAAGGACAGCTCAGGGTCTTGAGCAAGAGGAGTGTCAGACGTTGCGTGAATCAGCGGAGGTGCCTGATGTGATTGGGGACGACTCCGTTGCTGGCGGTGTTGTCTCTGGTTCACAGAACAGTTCCAGTGTGTATGAGGTTCAGCCGGGTGTAGAATCAGGCTTGTCAACCACACCAACTAGCATTGCTAAGCAAAAGGGAAGAAGAATTGCAACCAGATACAACAGAAGGGGCAGGGGCAAGGGTGTCAAATGA

>Glyma06g07966.2   sequence type=CDS   gene model=Glyma06g07966   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCGTTCCCGGATCTCGATCCGCCGGCAAAATTGTCCGCACGCGCCGGAGCGCAGCCGCAAGGAGTCGCACCCCCTACGACCGCCCCGCGCCGCCGCCGCCGCCGCCGGAGCCTCCGAGCCCTAATTGGATCTCTCGTTTCGTTATCTCTCCCTCGCGTTTCATTGCTTCTGGCGCCGGAAAAATCTTCTCCTCTGTTTTGGATCTCGATAATTCTCCTTCTGATTCTTCCTCTGCTACGTCTTCTCATTCCTCTTCCGCTAACGATTCCGATGCTGAGGAAGTTGGTACTTTCGATGATGAAAATGATAACCCTTCTGAAGGTGATGTGGCATTGAGCAAGCCATGTGTTGGGAATAGCAAAAGCAAGCATATGATTGAGCAACTACTTATGAAGGAGTCATTCTCAAGGGAAGAATGTGATAGGCTGATAAAAATAATAAGATCAAGAGTGGTAGATCCTGCAAATGATGATGATGGGGATAAGAGGCCAACGGATATACCCAACAAGATTTTTGGAAGTGATTCACCTGAGCTCCATAGTGCTGCCATTATGGAGGCAAAGAAATGGCTGCGGGAAAAGAAGTCAGGTTTAGATACAAATTCAGATATAGGTTATGGAAGTCCTAGTTTGAATTTGGTTGCATTACCACAAGACCCCAAAGATGAAGGATCACCAGTGGATGTGGCTAAGTTGTATATGCGCACACGCCCTCCATGGGCATCACCTTCCATAGACCATACTAAACCTCAAACACCATCTGGAATTCAGCTATTTAAAGAAGAAACACCATATCTATTTGGCAACAATTCTACACCACCCTCCAAGTTGAAAAGGGATTCTGCTGCTACTGGTTCATGGAGTATTCAGGATGAAATACGAAGAGTAAGATCCAGGGCAACAGAGGATTTGCTTAGATCACTTCCATCCTCAAAAATTGATTGGTCTGCATTTGCCATGGAGAATAAAAATAATGTAAACTCTTCAGCTATTGAAAATATTGGAGCTAGTTTGGGAGAGAGAGTACACAATTCAACAAATTTAGTGGATGCATCTGCGAACTTGGCCAGAGGATTAGGTTCTCAGGTCTCTCCAGATTTGGATAGTAAACTAGATGAGTTCCAACCTGAATCTGTGCTGTCTAATCCAGTTAACATTAATTTTGAACAGAATCAGGGCTCTGTTGCTGTTCAGCAGACCAGAGGTACACAAGATGGCGGCGAAATAACTACTTCAGGACTAAGAGATGGGTCCTCGGATGATATGCACAGGGATGGCGGTCTGGTTAAAGTCAATGGCATCAGTGACACAAATGGGCCTGGTCATCAGCTAGATTCTGTTGAAGAAACTAGAGAAGCAATAAATTCTAGATTACAAGATAGTAACCACTTAGTAATCAAAGAGAAGGTTAGAGCAGAAGATGCATTAGCAAATGGTTTTCCCTCTTCAGAGCCAAGTTTCAATCCAGGGCAGGTTATTGAACAGAGCACAAAAACATTGGACAACAAACCTAATACGACTGATTCAAGTCAGGAAAGGACAGCTCAGGGTCTTGAGCAAGAGGAGTGTCAGACGTTGCGTGAATCAGCGGAGGTGCCTGATGTGATTGGGGACGACTCCGTTGCTGGCGGTGTTGTCTCTGGTTCACAGAACAGTTCCAGTGTGTATGAGGTTCAGCCGGGTGTAGAATCAGGCTTGTCAACCACACCAACTAGCATTGCTAAGCAAAAGGGAAGAAGAATTGCAACCAGATACAACAGAAGGGGCAGGGGCAAGGGTGTCAAATGA
Predicted protein sequences of Glyma06g07966
>Glyma06g07966.1   sequence type=predicted peptide   gene model=Glyma06g07966   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVPGSRSAGKIVRTRRSAAARSRTPYDRPAPPPPPPEPPSPNWISRFVISPSRFIASGAGKIFSSVLDLDNSPSDSSSATSSHSSSANDSDAEEVGTFDDENDNPSEGDVALSKGLQPCVGNSKSKHMIEQLLMKESFSREECDRLIKIIRSRVVDPANDDDGDKRPTDIPNKIFGSDSPELHSAAIMEAKKWLREKKSGLDTNSDIGYGSPSLNLVALPQDPKDEGSPVDVAKLYMRTRPPWASPSIDHTKPQTPSGIQLFKEETPYLFGNNSTPPSKLKRDSAATGSWSIQDEIRRVRSRATEDLLRSLPSSKIDWSAFAMENKNNVNSSAIENIGASLGERVHNSTNLVDASANLARGLGSQVSPDLDSKLDEFQPESVLSNPVNINFEQNQGSVAVQQTRGTQDGGEITTSGLRDGSSDDMHRDGGLVKVNGISDTNGPGHQLDSVEETREAINSRLQDSNHLVIKEKVRAEDALANGFPSSEPSFNPGQVIEQSTKTLDNKPNTTDSSQERTAQGLEQEECQTLRESAEVPDVIGDDSVAGGVVSGSQNSSSVYEVQPGVESGLSTTPTSIAKQKGRRIATRYNRRGRGKGVK*

>Glyma06g07966.2   sequence type=predicted peptide   gene model=Glyma06g07966   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVPGSRSAGKIVRTRRSAAARSRTPYDRPAPPPPPPEPPSPNWISRFVISPSRFIASGAGKIFSSVLDLDNSPSDSSSATSSHSSSANDSDAEEVGTFDDENDNPSEGDVALSKPCVGNSKSKHMIEQLLMKESFSREECDRLIKIIRSRVVDPANDDDGDKRPTDIPNKIFGSDSPELHSAAIMEAKKWLREKKSGLDTNSDIGYGSPSLNLVALPQDPKDEGSPVDVAKLYMRTRPPWASPSIDHTKPQTPSGIQLFKEETPYLFGNNSTPPSKLKRDSAATGSWSIQDEIRRVRSRATEDLLRSLPSSKIDWSAFAMENKNNVNSSAIENIGASLGERVHNSTNLVDASANLARGLGSQVSPDLDSKLDEFQPESVLSNPVNINFEQNQGSVAVQQTRGTQDGGEITTSGLRDGSSDDMHRDGGLVKVNGISDTNGPGHQLDSVEETREAINSRLQDSNHLVIKEKVRAEDALANGFPSSEPSFNPGQVIEQSTKTLDNKPNTTDSSQERTAQGLEQEECQTLRESAEVPDVIGDDSVAGGVVSGSQNSSSVYEVQPGVESGLSTTPTSIAKQKGRRIATRYNRRGRGKGVK*






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