SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G31430 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:15248510-15251945 FORWARD LENGTH=485 | SoyBase | E_val: 1.00E-44 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| UniRef100_Q01KL2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0147J19.13 protein n=1 Tax=Oryza sativa RepID=Q01KL2_ORYSA | SoyBase | E_val: 7.00E-21 | ISS |
| UniRef100_UPI000233A18B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A18B related cluster n=1 Tax=unknown RepID=UPI000233A18B | SoyBase | E_val: 0 | ISS |
|
Glyma06g07966 not represented in the dataset |
Glyma06g07966 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g07921 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g075900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g07966.2 sequence type=transcript gene model=Glyma06g07966 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAATCACAAGAGGCAACATTTTTCCTGGCCCACACAACACACACTGACGATAAAAACAAATATTAAAAGAAAAAAGTTAAAAATAAAAAACGCAATAAACTGAAGATAACCGCTACAACAATCAAACTCGGCGTCTGTTTCTGGGAAATAAGAAGAGAAGAGTGAAGTTAAGTGGTGTTTTTGGAACTGAAAATTTGAACTCTGCAACGAAAACAGAAGCACTTTCCCACGTGCTTCGATGGCTTCCGTTCCCGGATCTCGATCCGCCGGCAAAATTGTCCGCACGCGCCGGAGCGCAGCCGCAAGGAGTCGCACCCCCTACGACCGCCCCGCGCCGCCGCCGCCGCCGCCGGAGCCTCCGAGCCCTAATTGGATCTCTCGTTTCGTTATCTCTCCCTCGCGTTTCATTGCTTCTGGCGCCGGAAAAATCTTCTCCTCTGTTTTGGATCTCGATAATTCTCCTTCTGATTCTTCCTCTGCTACGTCTTCTCATTCCTCTTCCGCTAACGATTCCGATGCTGAGGAAGTTGGTACTTTCGATGATGAAAATGATAACCCTTCTGAAGGTGATGTGGCATTGAGCAAGCCATGTGTTGGGAATAGCAAAAGCAAGCATATGATTGAGCAACTACTTATGAAGGAGTCATTCTCAAGGGAAGAATGTGATAGGCTGATAAAAATAATAAGATCAAGAGTGGTAGATCCTGCAAATGATGATGATGGGGATAAGAGGCCAACGGATATACCCAACAAGATTTTTGGAAGTGATTCACCTGAGCTCCATAGTGCTGCCATTATGGAGGCAAAGAAATGGCTGCGGGAAAAGAAGTCAGGTTTAGATACAAATTCAGATATAGGTTATGGAAGTCCTAGTTTGAATTTGGTTGCATTACCACAAGACCCCAAAGATGAAGGATCACCAGTGGATGTGGCTAAGTTGTATATGCGCACACGCCCTCCATGGGCATCACCTTCCATAGACCATACTAAACCTCAAACACCATCTGGAATTCAGCTATTTAAAGAAGAAACACCATATCTATTTGGCAACAATTCTACACCACCCTCCAAGTTGAAAAGGGATTCTGCTGCTACTGGTTCATGGAGTATTCAGGATGAAATACGAAGAGTAAGATCCAGGGCAACAGAGGATTTGCTTAGATCACTTCCATCCTCAAAAATTGATTGGTCTGCATTTGCCATGGAGAATAAAAATAATGTAAACTCTTCAGCTATTGAAAATATTGGAGCTAGTTTGGGAGAGAGAGTACACAATTCAACAAATTTAGTGGATGCATCTGCGAACTTGGCCAGAGGATTAGGTTCTCAGGTCTCTCCAGATTTGGATAGTAAACTAGATGAGTTCCAACCTGAATCTGTGCTGTCTAATCCAGTTAACATTAATTTTGAACAGAATCAGGGCTCTGTTGCTGTTCAGCAGACCAGAGGTACACAAGATGGCGGCGAAATAACTACTTCAGGACTAAGAGATGGGTCCTCGGATGATATGCACAGGGATGGCGGTCTGGTTAAAGTCAATGGCATCAGTGACACAAATGGGCCTGGTCATCAGCTAGATTCTGTTGAAGAAACTAGAGAAGCAATAAATTCTAGATTACAAGATAGTAACCACTTAGTAATCAAAGAGAAGGTTAGAGCAGAAGATGCATTAGCAAATGGTTTTCCCTCTTCAGAGCCAAGTTTCAATCCAGGGCAGGTTATTGAACAGAGCACAAAAACATTGGACAACAAACCTAATACGACTGATTCAAGTCAGGAAAGGACAGCTCAGGGTCTTGAGCAAGAGGAGTGTCAGACGTTGCGTGAATCAGCGGAGGTGCCTGATGTGATTGGGGACGACTCCGTTGCTGGCGGTGTTGTCTCTGGTTCACAGAACAGTTCCAGTGTGTATGAGGTTCAGCCGGGTGTAGAATCAGGCTTGTCAACCACACCAACTAGCATTGCTAAGCAAAAGGGAAGAAGAATTGCAACCAGATACAACAGAAGGGGCAGGGGCAAGGGTGTCAAATGATGCCTGTTGTATTATGTATGTTAAATTGTAAGTCACTGTTAGCTTAGAAAGTATAGGGATTCTGCAGGTCATTTGTTGTGAGATTAATAATATTCACGAATGAGTCTACGTCAACTTAGACAGGTTTATTTTTTTCTTTCATTTGTTCTCTTTTTTTTTGGTGATTACGTTCAGGGAAATCAGGTTCAGGAATTGGAAATGTATTTGCTGTATAAATAGTTAAATTAGCGACATTTTTTTTTTACCTAGTTAACTAGGTAACATGGATTTATGACATGCACGAACATGTGCAGCCTGAATGGTAACACTGGTCCTTGCACTAGCATTCTCTATGAGGCTCCTCTAGTGAATCATAATATTTTGTAACATCAAAGTACTCGAATTAGTTTGAGTTTGATGACTAGAAAGGTTTTTGTATGCATCGCTTTGGAATCAGGAATTTATAATGAGGATTTACGCACATTGTTTAACTTAAATTCTCAGGTACATAGTTTGGTTTACCAGGTTTAAGAGGAAAGG
>Glyma06g07966.1 sequence type=CDS gene model=Glyma06g07966 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCGTTCCCGGATCTCGATCCGCCGGCAAAATTGTCCGCACGCGCCGGAGCGCAGCCGCAAGGAGTCGCACCCCCTACGACCGCCCCGCGCCGCCGCCGCCGCCGCCGGAGCCTCCGAGCCCTAATTGGATCTCTCGTTTCGTTATCTCTCCCTCGCGTTTCATTGCTTCTGGCGCCGGAAAAATCTTCTCCTCTGTTTTGGATCTCGATAATTCTCCTTCTGATTCTTCCTCTGCTACGTCTTCTCATTCCTCTTCCGCTAACGATTCCGATGCTGAGGAAGTTGGTACTTTCGATGATGAAAATGATAACCCTTCTGAAGGTGATGTGGCATTGAGCAAGGGGCTCCAGCCATGTGTTGGGAATAGCAAAAGCAAGCATATGATTGAGCAACTACTTATGAAGGAGTCATTCTCAAGGGAAGAATGTGATAGGCTGATAAAAATAATAAGATCAAGAGTGGTAGATCCTGCAAATGATGATGATGGGGATAAGAGGCCAACGGATATACCCAACAAGATTTTTGGAAGTGATTCACCTGAGCTCCATAGTGCTGCCATTATGGAGGCAAAGAAATGGCTGCGGGAAAAGAAGTCAGGTTTAGATACAAATTCAGATATAGGTTATGGAAGTCCTAGTTTGAATTTGGTTGCATTACCACAAGACCCCAAAGATGAAGGATCACCAGTGGATGTGGCTAAGTTGTATATGCGCACACGCCCTCCATGGGCATCACCTTCCATAGACCATACTAAACCTCAAACACCATCTGGAATTCAGCTATTTAAAGAAGAAACACCATATCTATTTGGCAACAATTCTACACCACCCTCCAAGTTGAAAAGGGATTCTGCTGCTACTGGTTCATGGAGTATTCAGGATGAAATACGAAGAGTAAGATCCAGGGCAACAGAGGATTTGCTTAGATCACTTCCATCCTCAAAAATTGATTGGTCTGCATTTGCCATGGAGAATAAAAATAATGTAAACTCTTCAGCTATTGAAAATATTGGAGCTAGTTTGGGAGAGAGAGTACACAATTCAACAAATTTAGTGGATGCATCTGCGAACTTGGCCAGAGGATTAGGTTCTCAGGTCTCTCCAGATTTGGATAGTAAACTAGATGAGTTCCAACCTGAATCTGTGCTGTCTAATCCAGTTAACATTAATTTTGAACAGAATCAGGGCTCTGTTGCTGTTCAGCAGACCAGAGGTACACAAGATGGCGGCGAAATAACTACTTCAGGACTAAGAGATGGGTCCTCGGATGATATGCACAGGGATGGCGGTCTGGTTAAAGTCAATGGCATCAGTGACACAAATGGGCCTGGTCATCAGCTAGATTCTGTTGAAGAAACTAGAGAAGCAATAAATTCTAGATTACAAGATAGTAACCACTTAGTAATCAAAGAGAAGGTTAGAGCAGAAGATGCATTAGCAAATGGTTTTCCCTCTTCAGAGCCAAGTTTCAATCCAGGGCAGGTTATTGAACAGAGCACAAAAACATTGGACAACAAACCTAATACGACTGATTCAAGTCAGGAAAGGACAGCTCAGGGTCTTGAGCAAGAGGAGTGTCAGACGTTGCGTGAATCAGCGGAGGTGCCTGATGTGATTGGGGACGACTCCGTTGCTGGCGGTGTTGTCTCTGGTTCACAGAACAGTTCCAGTGTGTATGAGGTTCAGCCGGGTGTAGAATCAGGCTTGTCAACCACACCAACTAGCATTGCTAAGCAAAAGGGAAGAAGAATTGCAACCAGATACAACAGAAGGGGCAGGGGCAAGGGTGTCAAATGA >Glyma06g07966.2 sequence type=CDS gene model=Glyma06g07966 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCGTTCCCGGATCTCGATCCGCCGGCAAAATTGTCCGCACGCGCCGGAGCGCAGCCGCAAGGAGTCGCACCCCCTACGACCGCCCCGCGCCGCCGCCGCCGCCGCCGGAGCCTCCGAGCCCTAATTGGATCTCTCGTTTCGTTATCTCTCCCTCGCGTTTCATTGCTTCTGGCGCCGGAAAAATCTTCTCCTCTGTTTTGGATCTCGATAATTCTCCTTCTGATTCTTCCTCTGCTACGTCTTCTCATTCCTCTTCCGCTAACGATTCCGATGCTGAGGAAGTTGGTACTTTCGATGATGAAAATGATAACCCTTCTGAAGGTGATGTGGCATTGAGCAAGCCATGTGTTGGGAATAGCAAAAGCAAGCATATGATTGAGCAACTACTTATGAAGGAGTCATTCTCAAGGGAAGAATGTGATAGGCTGATAAAAATAATAAGATCAAGAGTGGTAGATCCTGCAAATGATGATGATGGGGATAAGAGGCCAACGGATATACCCAACAAGATTTTTGGAAGTGATTCACCTGAGCTCCATAGTGCTGCCATTATGGAGGCAAAGAAATGGCTGCGGGAAAAGAAGTCAGGTTTAGATACAAATTCAGATATAGGTTATGGAAGTCCTAGTTTGAATTTGGTTGCATTACCACAAGACCCCAAAGATGAAGGATCACCAGTGGATGTGGCTAAGTTGTATATGCGCACACGCCCTCCATGGGCATCACCTTCCATAGACCATACTAAACCTCAAACACCATCTGGAATTCAGCTATTTAAAGAAGAAACACCATATCTATTTGGCAACAATTCTACACCACCCTCCAAGTTGAAAAGGGATTCTGCTGCTACTGGTTCATGGAGTATTCAGGATGAAATACGAAGAGTAAGATCCAGGGCAACAGAGGATTTGCTTAGATCACTTCCATCCTCAAAAATTGATTGGTCTGCATTTGCCATGGAGAATAAAAATAATGTAAACTCTTCAGCTATTGAAAATATTGGAGCTAGTTTGGGAGAGAGAGTACACAATTCAACAAATTTAGTGGATGCATCTGCGAACTTGGCCAGAGGATTAGGTTCTCAGGTCTCTCCAGATTTGGATAGTAAACTAGATGAGTTCCAACCTGAATCTGTGCTGTCTAATCCAGTTAACATTAATTTTGAACAGAATCAGGGCTCTGTTGCTGTTCAGCAGACCAGAGGTACACAAGATGGCGGCGAAATAACTACTTCAGGACTAAGAGATGGGTCCTCGGATGATATGCACAGGGATGGCGGTCTGGTTAAAGTCAATGGCATCAGTGACACAAATGGGCCTGGTCATCAGCTAGATTCTGTTGAAGAAACTAGAGAAGCAATAAATTCTAGATTACAAGATAGTAACCACTTAGTAATCAAAGAGAAGGTTAGAGCAGAAGATGCATTAGCAAATGGTTTTCCCTCTTCAGAGCCAAGTTTCAATCCAGGGCAGGTTATTGAACAGAGCACAAAAACATTGGACAACAAACCTAATACGACTGATTCAAGTCAGGAAAGGACAGCTCAGGGTCTTGAGCAAGAGGAGTGTCAGACGTTGCGTGAATCAGCGGAGGTGCCTGATGTGATTGGGGACGACTCCGTTGCTGGCGGTGTTGTCTCTGGTTCACAGAACAGTTCCAGTGTGTATGAGGTTCAGCCGGGTGTAGAATCAGGCTTGTCAACCACACCAACTAGCATTGCTAAGCAAAAGGGAAGAAGAATTGCAACCAGATACAACAGAAGGGGCAGGGGCAAGGGTGTCAAATGA
>Glyma06g07966.1 sequence type=predicted peptide gene model=Glyma06g07966 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASVPGSRSAGKIVRTRRSAAARSRTPYDRPAPPPPPPEPPSPNWISRFVISPSRFIASGAGKIFSSVLDLDNSPSDSSSATSSHSSSANDSDAEEVGTFDDENDNPSEGDVALSKGLQPCVGNSKSKHMIEQLLMKESFSREECDRLIKIIRSRVVDPANDDDGDKRPTDIPNKIFGSDSPELHSAAIMEAKKWLREKKSGLDTNSDIGYGSPSLNLVALPQDPKDEGSPVDVAKLYMRTRPPWASPSIDHTKPQTPSGIQLFKEETPYLFGNNSTPPSKLKRDSAATGSWSIQDEIRRVRSRATEDLLRSLPSSKIDWSAFAMENKNNVNSSAIENIGASLGERVHNSTNLVDASANLARGLGSQVSPDLDSKLDEFQPESVLSNPVNINFEQNQGSVAVQQTRGTQDGGEITTSGLRDGSSDDMHRDGGLVKVNGISDTNGPGHQLDSVEETREAINSRLQDSNHLVIKEKVRAEDALANGFPSSEPSFNPGQVIEQSTKTLDNKPNTTDSSQERTAQGLEQEECQTLRESAEVPDVIGDDSVAGGVVSGSQNSSSVYEVQPGVESGLSTTPTSIAKQKGRRIATRYNRRGRGKGVK* >Glyma06g07966.2 sequence type=predicted peptide gene model=Glyma06g07966 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASVPGSRSAGKIVRTRRSAAARSRTPYDRPAPPPPPPEPPSPNWISRFVISPSRFIASGAGKIFSSVLDLDNSPSDSSSATSSHSSSANDSDAEEVGTFDDENDNPSEGDVALSKPCVGNSKSKHMIEQLLMKESFSREECDRLIKIIRSRVVDPANDDDGDKRPTDIPNKIFGSDSPELHSAAIMEAKKWLREKKSGLDTNSDIGYGSPSLNLVALPQDPKDEGSPVDVAKLYMRTRPPWASPSIDHTKPQTPSGIQLFKEETPYLFGNNSTPPSKLKRDSAATGSWSIQDEIRRVRSRATEDLLRSLPSSKIDWSAFAMENKNNVNSSAIENIGASLGERVHNSTNLVDASANLARGLGSQVSPDLDSKLDEFQPESVLSNPVNINFEQNQGSVAVQQTRGTQDGGEITTSGLRDGSSDDMHRDGGLVKVNGISDTNGPGHQLDSVEETREAINSRLQDSNHLVIKEKVRAEDALANGFPSSEPSFNPGQVIEQSTKTLDNKPNTTDSSQERTAQGLEQEECQTLRESAEVPDVIGDDSVAGGVVSGSQNSSSVYEVQPGVESGLSTTPTSIAKQKGRRIATRYNRRGRGKGVK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
