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Report for Sequence Feature Glyma06g07890

Feature Type:gene_model
Chromosome:Gm06
Start:5801995
stop:5806725
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g07890
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31140AT Annotation by Michelle Graham. TAIR10: O-Glycosyl hydrolases family 17 protein | chr4:15141581-15143188 FORWARD LENGTH=484 SoyBaseE_val: 0ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0031225GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane SoyBaseN/AISS
GO:0046658GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
GO:0043169GO-mf Annotation by Michelle Graham. GO Molecular Function: cation binding SoyBaseN/AISS
PTHR16631Panther GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED JGI ISS
PF00332PFAM Glycosyl hydrolases family 17 JGI ISS
PF07983PFAM X8 domain JGI ISS
UniRef100_G7JCB1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glucan endo-1 3-beta-glucosidase n=1 Tax=Medicago truncatula RepID=G7JCB1_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1K927UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K927_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g07890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g07890
ParalogEvidenceComments
Glyma04g07820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g07890 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g075100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g07890
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g07890
>Glyma06g07890.1   sequence type=CDS   gene model=Glyma06g07890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGGGGTGGGAAGTTTAGTAGTTTTTTTGTTGTTTTTGTGTTGTTGGTGGGGTCAGGGAGTGGGATTGGTGTGAATTGGGGGACACAGTCAACACACCCTTTGTCACCGTCGAAGGTGGTGAAGATGCTGAAGGACAATGGCATTCAGAAGGTGAAGCTTTTTGATGCTGATGCTGGTATCTTGGATGCTCTCAAGAAGTCCGGAATACAGGTCATGGTTGGGATTCCAAATGACATGCTTTATACGCTGGCTAACAGTGTGGAAGCTGCTGAAAAATGGGTTTCCAAGAATGTCTCAAAACATGTCTCTTCTGGAGGAGTGGACATCAGGTACGTTGCAGTGGGGAATGAACCATTCTTGTCAACCTACAACGGTTCCTTCGAAGCCACAACTCTTCCAGCTCTCCAAAACATCCAGGCAGCTCTCACAAAATCCGGTTTGAGCAATCGTGTCAAAGTCACTGTCCCCTTAAATGCCGATGTATACCAAAGCTCATCCGAAAAGCCATCGGACGGCGGTTTCAGACCTGACATCAACAATGTGATGCTGCAGATTGTCAAGTTCCTTAACAACAACGGAGCTCCCTTCACAGTGAACATCTATCCTTTCATCAGCCTCTATGCAGACCCCAATTTCCCTGTTGACTACGCCTTCTTTAACGGCTACCAGCCCGCCATAAACGACAACGGAAGAAACTATGACAACGTGTTTGATGCCAACCATGACACTCTAGTATGGGCACTGCAGAAGAATGGCTTCGGAAACCTGCCTATAATTGTGGGGGAAATAGGGTGGCCAACAGACGGGGACCGAAATGCAAACCTTCAATATGCACAACGTTTTAACCAAGGTTTCATGTCACGTTACATGTCTGGAAAGGGTACCCCAATGAGGCCTGGTCCTATAGATGCTTATTTGTTTAGTCTCATAGATGAAGATGCCAAAAGCATTCAGCCAGGTAACTTTGAGCGTCATTGGGGCATGTTTTACTTCGATGCACAACCCAAATACCAACTTAACCTTGGGTCAGCACGAGGTAACGGGCTAGTAGGTGCTAGTGGTGTTGATCATTTGGCTAAAAAGTGGTGTGTTTTGAAACCCTCAGCAAACCTTAATGATGACCAACTTGCACCTAGTGTGGCCTATGCTTGTCAAAATGCTGATTGCACTAGTCTTGGGTATGGAACTTCTTGTGGCAATTTAGATGTGCATGGTAACATTTCTTATGCTTTTAATAGCTACTATCAGATAAATGACCAGATGGATAGTGCATGCAAATTCCCCAGCCTTTCCATGATCACTGACAAGGACCCTTCTGTAGGAGATTGCAAGTTCAGAATCATGATCCAGACAGATTCTGCGGAGCTACATGGAAAAGTTGGATATCTAACAACAGTGCTATGTTTTTTTGTACTTTTGCTATTCTGTAATCCTTGGTTTTGA
Predicted protein sequences of Glyma06g07890
>Glyma06g07890.1   sequence type=predicted peptide   gene model=Glyma06g07890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGGGKFSSFFVVFVLLVGSGSGIGVNWGTQSTHPLSPSKVVKMLKDNGIQKVKLFDADAGILDALKKSGIQVMVGIPNDMLYTLANSVEAAEKWVSKNVSKHVSSGGVDIRYVAVGNEPFLSTYNGSFEATTLPALQNIQAALTKSGLSNRVKVTVPLNADVYQSSSEKPSDGGFRPDINNVMLQIVKFLNNNGAPFTVNIYPFISLYADPNFPVDYAFFNGYQPAINDNGRNYDNVFDANHDTLVWALQKNGFGNLPIIVGEIGWPTDGDRNANLQYAQRFNQGFMSRYMSGKGTPMRPGPIDAYLFSLIDEDAKSIQPGNFERHWGMFYFDAQPKYQLNLGSARGNGLVGASGVDHLAKKWCVLKPSANLNDDQLAPSVAYACQNADCTSLGYGTSCGNLDVHGNISYAFNSYYQINDQMDSACKFPSLSMITDKDPSVGDCKFRIMIQTDSAELHGKVGYLTTVLCFFVLLLFCNPWF*






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