Glyma06g07840 - SoyBase

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Report for Sequence Feature Glyma06g07840

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5745438
stop:	5751723
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g07840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32650	AT	Annotation by Michelle Graham. TAIR10: potassium channel in Arabidopsis thaliana 3 \| chr4:15751482-15754797 REVERSE LENGTH=661	SoyBase	E_val: 0	ISS
GO:0006811	GO-bp	Annotation by Michelle Graham. GO Biological Process: ion transport	SoyBase	N/A	ISS
GO:0006813	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transport	SoyBase	N/A	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005242	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inward rectifier potassium channel activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0030551	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding	SoyBase	N/A	ISS
KOG0498	KOG	K+-channel ERG and related proteins, contain PAS/PAC sensor domain	JGI		ISS
PTHR10217	Panther	VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL	JGI		ISS
PTHR10217:SF6	Panther	EAG-RELATED VOLTAGE-GATED POTASSIUM CHANNEL	JGI		ISS
PF00027	PFAM	Cyclic nucleotide-binding domain	JGI		ISS
PF07885	PFAM	Ion channel	JGI		ISS
PF11834	PFAM	Domain of unknown function (DUF3354)	JGI		ISS
UniRef100_G7JC98	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Potassium channel n=1 Tax=Medicago truncatula RepID=G7JC98_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A187	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A187 related cluster n=1 Tax=unknown RepID=UPI000233A187	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g07840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g07840

Paralog	Evidence	Comments
Glyma04g07750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g07840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g074600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g07840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g07840

Limit To All Plant Sequences

>Glyma06g07840.2   sequence type=CDS   gene model=Glyma06g07840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATTGTCATCTCTAGTTAGAAGACGCTCAAGCGACGAAATAACCAACTCGGCCTCGGTTTCCAGTAGCCTCTTTCCAGCATTTGGCACCACCATCTTTGATGTTGAAGGTTACTCGAAGTCGAACCTAAGAAAATATGTCATTGCTCCCTATGACCGTAGATATCAATTGTGGCAAACGTTCCTTGCGGCATTGGTAGTGTACTCTGCATGGGCATCTCCATTCGAGCTAGCTTTCCGGGAACTGTTAGTTGGGTCGCTGTTGCCCAAGATTGCTCTCAGGTACGTCAAAAAGTTACACTTCACCATGGATATAGCCTCCACTGTGCCATTTGAGCAGATACATCAAATTCTGACGGGCAAACCAACCAAAAGCGAGGTCTTTGGTTTCCTAATTATGCTTAGACTATGGCGATTGAGGCGTGTTAGCGAACTCTTCGCAAGATATAATACGTATTTAAGTGTGCCACCTAATTTTGAAAAAAAAGACATACGAATTAACTACCCAGCAACAAGATTTTGCAAACTTATATGCGTGACGCTATTTGCAGTGCACTTCGCAGGCTGCATGTATTTTTGGTTGGCTGTCCAACTCAAAACACCCAAAAACACGTGGATCGGGAACAAAACAGAGGATTTTAATGATTTGAGCGTCGGGTTGGGTTACACTTATTCCATGTACTGGTCTGTTGCAACCCTTACTACTGTTGGCTATGGAGATTTCTATGCAGTGAATTTAACAGAGAAGCTTTTCAGTACTTTATACATGCTGTTTAACATCGGCCTCACTTCATATATAATCGGAAACATGACAAATCTGTTAGTTCATAGCTCTGTCGGAACATTTGCAATGAGGAATGCCTTCAACAGAATATTACAATATGCAAACAAATATAGACTCCTGGAAGGCTTAAAAGAGCAAATGTCGGCACACATGCAATTGAAGTTTAAGACTGCAGAGTTACAGCAAGAAGTGCTACAATACCTACCTAAAACAATAAGATCCAATATTGCTCGGCATCTTTTCCAAAACATAGTTGAAACAGCATATTTATTTAAAGGAGTGTCAGAAACGAAAGCAGAATACTACCCATCTAAGGTTGACATTATCTTGCAAAATGAGATGTCAACATATTTCTACATTTTGGTATCCGGATCACTGGATGTGTTGATGTACAAGAATGGGTCCGAACAGTTTTTGTTCAAACTTGAATCTGGAGGCATGGCAGGAGAAATAGGCGTGATGTTTAATATTCCACAACCTTTTACAGTGAGAAGTAGAGGGCTCTCCCAGGTCAAACGAATCAATCATCGTCATTTCAAGCATATGGTGCAACCATTTAGTGATGATGTGAAGGCAATCAACTACAACTTTATTAAGTATTTTAAGGGCCTCAAAGGCAAGGTGCTAGAAGAAATATCATATATAACAGAATTGATGGGTGACCTTCATGATGAGCATTTAATGCAAAATGTGGGTACAGACGATGAAGTTTCAAGATATCAAGAAGCTTCATATAAAGAAGGAAGAAAAGGAAATTCCAAACCACTGTCAAGTCCAGTCCCCATTAGAGTTAAAATCCACGGACACCATCCCAATGAACACAAAGTGGGAAACGAAACAACACCAAAGATCATACTTCTCCCAAATTCGGTAGAAGATCTTTTCAGTGTTGCAGAGAAAAAATTTGGAAACAGAGGAAGCAAAATTCTTATGGCTGACGGCTCAGAGGTAGAAGAATTAAGCGCAATAAGGGAGAATGATAAGTTATATATCCTCTAA

Predicted protein sequences of Glyma06g07840

Limit To All Plant Sequences

>Glyma06g07840.2   sequence type=predicted peptide   gene model=Glyma06g07840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLSSLVRRRSSDEITNSASVSSSLFPAFGTTIFDVEGYSKSNLRKYVIAPYDRRYQLWQTFLAALVVYSAWASPFELAFRELLVGSLLPKIALRYVKKLHFTMDIASTVPFEQIHQILTGKPTKSEVFGFLIMLRLWRLRRVSELFARYNTYLSVPPNFEKKDIRINYPATRFCKLICVTLFAVHFAGCMYFWLAVQLKTPKNTWIGNKTEDFNDLSVGLGYTYSMYWSVATLTTVGYGDFYAVNLTEKLFSTLYMLFNIGLTSYIIGNMTNLLVHSSVGTFAMRNAFNRILQYANKYRLLEGLKEQMSAHMQLKFKTAELQQEVLQYLPKTIRSNIARHLFQNIVETAYLFKGVSETKAEYYPSKVDIILQNEMSTYFYILVSGSLDVLMYKNGSEQFLFKLESGGMAGEIGVMFNIPQPFTVRSRGLSQVKRINHRHFKHMVQPFSDDVKAINYNFIKYFKGLKGKVLEEISYITELMGDLHDEHLMQNVGTDDEVSRYQEASYKEGRKGNSKPLSSPVPIRVKIHGHHPNEHKVGNETTPKIILLPNSVEDLFSVAEKKFGNRGSKILMADGSEVEELSAIRENDKLYIL*

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