Glyma06g07800 - SoyBase

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Report for Sequence Feature Glyma06g07800

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5718426
stop:	5724262
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g07800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25560	AT	Annotation by Michelle Graham. TAIR10: CHY-type/CTCHY-type/RING-type Zinc finger protein \| chr5:8899486-8901391 FORWARD LENGTH=308	SoyBase	E_val: 7.00E-156	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1940	KOG	Zn-finger protein	JGI		ISS
PTHR21319	Panther	RING FINGER AND CHY ZINC FINGER DOMAIN CONTAINING 1	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
PF05495	PFAM	CHY zinc finger	JGI		ISS
UniRef100_G7JC88	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger and CHY zinc finger domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JC88_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K915	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K915_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g07800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g07800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g074300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g07800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g07800

Limit To All Plant Sequences

>Glyma06g07800.2   sequence type=transcript   gene model=Glyma06g07800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACAGAAGACAAGCACAAAGGCTGTGGAAGGAAGTTCAGAGGCATATTTATAAATACCATCCCCATTCCTATTCCCTTCTGCTGGAATTGGAATTGGATCGCCCACCACTCTCTCCAGCTCCAAAGTCACCGGACTACTGCCTGCTTCTAAATAGCTTATAATCTTATCTGAAGATAGAGATATCATCATGGGAGAGGTGGCAGTAATGCATTCTGAGCCTCTGCAGTTTGATTGCAATGACATGAAGCATATCACTGAGAAAGATGTATATAATCTATTGTCAAACGAAGAGCACATACTTGGAGAAGAATCAAGTCAATCATCAAATGACAAAAAGATCAATGATTTGAGAGAGAGAGGATACATGAAATGTCAACATTACCGAAGAAGATGCCGTATTAGGGCCCCCTGTTGTGATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATAATATCAACATTGACCAGAAGCATAGACACGATATTCCCCGCCATCAAGTTAAACAGGTGATATGTTCTCTTTGTGAGACAGAACAAGAGGTTCAGCAAAATTGTATTAACTGTGGCGTTTGTATGGGCAAGTACTTCTGTGGGACGTGTAAGCTCTTTGATGATGATGTATCTAAGCAGCAGTATCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGATGTGAAAATTTCTTCCACTGCCACAAATGTGGTTGTTGCTACTCAACTCAGCTGAAAAACAGCCACCCTTGCGTGGAAGGAGCAATGCATCATGATTGCCCCATTTGCTTTGAGTATTTGTTTGAATCTGTGAATGATGTCACTGTTCTGCTCTGTGGACATACAATACATAAGAGCTGCCTAAAGGAAATGAGGGAACATTTCCAGTATGCATGCCCTCTCTGCTTGAAGTCGGTTTGTGATATGTCAAAGGTTTGGGAGAAATTTGACTTGGAGATTGCTGCTACACCAATGCCTGAACCGTATCAAAACAAAATGGTTTGGATCCTTTGCAATGATTGTGGCAAAAGTTCTCACGTGCAGTTCCATCTTGTTGCTCAAAAGTGCTTGAACTGCAAGTCCTACAACACACGGGAAACAAGAGGCTGAGCAAGTGGTAATGGTTATTTATAGGACCACTTTTGCTCTCACTTCATTGCTGTGTAGGTGTAGTGGCAATCCAAGTGCATCCTTTATTGAGGAAAATGCATGTGGGAATTGTCATTTAATTGCAGGCAGGCCGAACCACATCCAAGAGAAAAACGGTTTATCACGTTGATGTGGTGTCGAGGGTAGTGTAGAGTCAGCAATTGTCGTGTTGGTTATTTCGTGTTGGGGAAACCCTTTTAGTGTTCCAGTGTTCACTCCTGTAATGTTTGTTTGGGATTAATGCCAACTTTCAAATTAGCTGTTACTTTATATATTTGTAGAATCGTAACACTGTCTTAAAAGTTGTGTTAAGATGTAACCTTCATCTCGTATGGATCTCAATTCTCTTTATAAACAAGAAAAATGATAATAGACAAG

Coding sequences of Glyma06g07800

Limit To All Plant Sequences

>Glyma06g07800.1   sequence type=CDS   gene model=Glyma06g07800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAGGTGGCAGTAATGCATTCTGAGCCTCTGCAGTTTGATTGCAATGACATGAAGCATATCACTGAGAAAGATGTATATAATCTATTGTCAAACGAAGAGCACATACTTGGAGAAGAATCAAGTCAATCATCAAATGACAAAAAGATCAATGATTTGAGAGAGAGAGGATACATGAAGTATGGATGTCAACATTACCGAAGAAGATGCCGTATTAGGGCCCCCTGTTGTGATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATAATATCAACATTGACCAGAAGCATAGACACGATATTCCCCGCCATCAAGTTAAACAGGTGATATGTTCTCTTTGTGAGACAGAACAAGAGGTTCAGCAAAATTGTATTAACTGTGGCGTTTGTATGGGCAAGTACTTCTGTGGGACGTGTAAGCTCTTTGATGATGATGTATCTAAGCAGCAGTATCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGATGTGAAAATTTCTTCCACTGCCACAAATGTGGTTGTTGCTACTCAACTCAGCTGAAAAACAGCCACCCTTGCGTGGAAGGAGCAATGCATCATGATTGCCCCATTTGCTTTGAGTATTTGTTTGAATCTGTGAATGATGTCACTGTTCTGCTCTGTGGACATACAATACATAAGAGCTGCCTAAAGGAAATGAGGGAACATTTCCAGTATGCATGCCCTCTCTGCTTGAAGTCGGTTTGTGATATGTCAAAGGTTTGGGAGAAATTTGACTTGGAGATTGCTGCTACACCAATGCCTGAACCGTATCAAAACAAAATGGTTTGGATCCTTTGCAATGATTGTGGCAAAAGTTCTCACGTGCAGTTCCATCTTGTTGCTCAAAAGTGCTTGAACTGCAAGTCCTACAACACACGGGAAACAAGAGGCTGA

>Glyma06g07800.2   sequence type=CDS   gene model=Glyma06g07800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAGGTGGCAGTAATGCATTCTGAGCCTCTGCAGTTTGATTGCAATGACATGAAGCATATCACTGAGAAAGATGTATATAATCTATTGTCAAACGAAGAGCACATACTTGGAGAAGAATCAAGTCAATCATCAAATGACAAAAAGATCAATGATTTGAGAGAGAGAGGATACATGAAATGTCAACATTACCGAAGAAGATGCCGTATTAGGGCCCCCTGTTGTGATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATAATATCAACATTGACCAGAAGCATAGACACGATATTCCCCGCCATCAAGTTAAACAGGTGATATGTTCTCTTTGTGAGACAGAACAAGAGGTTCAGCAAAATTGTATTAACTGTGGCGTTTGTATGGGCAAGTACTTCTGTGGGACGTGTAAGCTCTTTGATGATGATGTATCTAAGCAGCAGTATCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGATGTGAAAATTTCTTCCACTGCCACAAATGTGGTTGTTGCTACTCAACTCAGCTGAAAAACAGCCACCCTTGCGTGGAAGGAGCAATGCATCATGATTGCCCCATTTGCTTTGAGTATTTGTTTGAATCTGTGAATGATGTCACTGTTCTGCTCTGTGGACATACAATACATAAGAGCTGCCTAAAGGAAATGAGGGAACATTTCCAGTATGCATGCCCTCTCTGCTTGAAGTCGGTTTGTGATATGTCAAAGGTTTGGGAGAAATTTGACTTGGAGATTGCTGCTACACCAATGCCTGAACCGTATCAAAACAAAATGGTTTGGATCCTTTGCAATGATTGTGGCAAAAGTTCTCACGTGCAGTTCCATCTTGTTGCTCAAAAGTGCTTGAACTGCAAGTCCTACAACACACGGGAAACAAGAGGCTGA

Predicted protein sequences of Glyma06g07800

Limit To All Plant Sequences

>Glyma06g07800.1   sequence type=predicted peptide   gene model=Glyma06g07800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEVAVMHSEPLQFDCNDMKHITEKDVYNLLSNEEHILGEESSQSSNDKKINDLRERGYMKYGCQHYRRRCRIRAPCCDEIFDCRHCHNEAKNNINIDQKHRHDIPRHQVKQVICSLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCHKCGCCYSTQLKNSHPCVEGAMHHDCPICFEYLFESVNDVTVLLCGHTIHKSCLKEMREHFQYACPLCLKSVCDMSKVWEKFDLEIAATPMPEPYQNKMVWILCNDCGKSSHVQFHLVAQKCLNCKSYNTRETRG*

>Glyma06g07800.2   sequence type=predicted peptide   gene model=Glyma06g07800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEVAVMHSEPLQFDCNDMKHITEKDVYNLLSNEEHILGEESSQSSNDKKINDLRERGYMKCQHYRRRCRIRAPCCDEIFDCRHCHNEAKNNINIDQKHRHDIPRHQVKQVICSLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCHKCGCCYSTQLKNSHPCVEGAMHHDCPICFEYLFESVNDVTVLLCGHTIHKSCLKEMREHFQYACPLCLKSVCDMSKVWEKFDLEIAATPMPEPYQNKMVWILCNDCGKSSHVQFHLVAQKCLNCKSYNTRETRG*

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