Glyma06g07780 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g07780

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5705151
stop:	5706539
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g07780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25680	AT	Annotation by Michelle Graham. TAIR10: molybdate transporter 1 \| chr2:10933167-10934537 REVERSE LENGTH=456	SoyBase	E_val: 0	ISS
GO:0015689	GO-bp	Annotation by Michelle Graham. GO Biological Process: molybdate ion transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0015098	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molybdate ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015116	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sulfate transmembrane transporter activity	SoyBase	N/A	ISS
UniRef100_B9RS83	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sulfate transporter, putative n=1 Tax=Ricinus communis RepID=B9RS83_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K913	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K913_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g07780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g07780

Paralog	Evidence	Comments
Glyma04g07690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g07780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g074100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g07780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g07780

Limit To All Plant Sequences

>Glyma06g07780.1   sequence type=CDS   gene model=Glyma06g07780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCACCGAACCCCCCACCCACTTCAGAAGCAAGTTCCTCCGCCGTACAGAAAGTGAAAAGCAATCTCGTCTTCCGTTCAACCTGGGCCGAACTCAACGGCGCCATGGGTGACCTAGGTACATACATACCCATTGTTCTGTCCCTAACCCTAGCCAGTGACCTCAACCTCGGCACCACATTGATCTTCACCGGCATGTACAACATCATCACCGGCGCCATCTACGGCGTCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCAGCTGTCGCCCTCGCCGACCCCACCTTCTCCATACCGGAGATCATGGCCTCCGGTATCCTCACCGGAGCAACCATGTTGGTCCTAGGCGTCACCGGGCTCATGCAGCTAGCTTACAAGCTCATTCCCTTGTGTGTTGTGAGGGGAATCCAGCTAGCACAGGGTTTGTCCTTTGCGTTGACCGCGGTCAAATATGTAAGAAAAGTACAAGATTTGCCTCGGTCCAAATCAATGGACCAAAGACACTCGCTTGGGTTCGATGGGTTGATTCTCGCCATCGCATGTGTTTGTTTTATTGTCATTGTAAATGGTGCTGGCGAGGACCCGAATCACGATCATGATCATGACCACGACGAAGAACCATCCCACCAAATCCAAGCCAGAATAAGTAATAAAGTGAGAAAAATAAGAAGGGTTATTTTTGCGCTTCCTTCGGCTTTCTTGGTGTTTGTGTTGGGAGTGTTGTTGGCTTTCATAAGAAGGCCTAGGGTGGTGCATGAGATTAAATTTGGACCCTCTTCTATAGAGGTGGTGAAAATGTCTAGACATGCATGGAAGCAAGGTTTCATAAAGGGCACAATCCCTCAACTCCCATTGTCAATTTTAAACTCTGTGATAGCGGTTTGCAAACTATCATCAGACTTGTTTCCAGGTAAAGATTTTTCAGTGACATCACTCTCAGTAACTGTAGGTTTGATGAACCTTGTGGGAGGGTGGTTTGGGGCCATGCCATGTTGCCATGGAGCTGGTGGGCTTGCGGGGCAGTATAAATTTGGAGGGAGGAGTGGAGGGTGTGTTGCACTTCTTGGTGCGGCTAAGTTGATTTTAGGGTTTGTGTTGGGAAGTTCTTTGGCTCATTTTTTCAACCAGTTTCCTGTGGGGATCTTAGGGGTGTTGCTCTTGTTTGCTGGGGTTGAACTAGCCATGGCTTCTAGGGACATGAATACTAAAGAAGATTCTTTTGTTATGCTTCTTTGTACTGCTGTTTCGTTGGTGGGGTCCAGTGCTGCTCTTGGATTCTTGTGTGGGATGATTGTTTTTGTGCTTCTTAAGCTAAGGGATTGGATAAATGGTAAGCCGATTAATGCTATTTGGAAGCATGAAGGCCCTGATGAGCAAGTTTGA

Predicted protein sequences of Glyma06g07780

Limit To All Plant Sequences

>Glyma06g07780.1   sequence type=predicted peptide   gene model=Glyma06g07780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPNPPPTSEASSSAVQKVKSNLVFRSTWAELNGAMGDLGTYIPIVLSLTLASDLNLGTTLIFTGMYNIITGAIYGVPMPVQPMKSIAAVALADPTFSIPEIMASGILTGATMLVLGVTGLMQLAYKLIPLCVVRGIQLAQGLSFALTAVKYVRKVQDLPRSKSMDQRHSLGFDGLILAIACVCFIVIVNGAGEDPNHDHDHDHDEEPSHQIQARISNKVRKIRRVIFALPSAFLVFVLGVLLAFIRRPRVVHEIKFGPSSIEVVKMSRHAWKQGFIKGTIPQLPLSILNSVIAVCKLSSDLFPGKDFSVTSLSVTVGLMNLVGGWFGAMPCCHGAGGLAGQYKFGGRSGGCVALLGAAKLILGFVLGSSLAHFFNQFPVGILGVLLLFAGVELAMASRDMNTKEDSFVMLLCTAVSLVGSSAALGFLCGMIVFVLLKLRDWINGKPINAIWKHEGPDEQV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain