Glyma06g07770 - SoyBase

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Report for Sequence Feature Glyma06g07770

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5696021
stop:	5699128
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g07770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24350	AT	Annotation by Michelle Graham. TAIR10: syntaxin of plants 32 \| chr3:8837733-8839402 FORWARD LENGTH=347	SoyBase	E_val: 3.00E-151	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005484	GO-mf	Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity	SoyBase	N/A	ISS
KOG0812	KOG	SNARE protein SED5/Syntaxin 5	JGI		ISS
PTHR19957	Panther	SYNTAXIN	JGI		ISS
PTHR19957:SF3	Panther	SYNTAXIN	JGI		ISS
PF00804	PFAM	Syntaxin	JGI		ISS
PF05739	PFAM	SNARE domain	JGI		ISS
UniRef100_B9RPA3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin, putative n=1 Tax=Ricinus communis RepID=B9RPA3_RICCO	SoyBase	E_val: 8.00E-159	ISS
UniRef100_I1K912	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K912_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g07770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g07770

Paralog	Evidence	Comments
Glyma04g07680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g07770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g074000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g07770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g07770

Limit To All Plant Sequences

>Glyma06g07770.1   sequence type=CDS   gene model=Glyma06g07770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACGCGAAATCGGCGCAGTCGTCGTTCCGGGATCGGACTCAGGAATTCCACAGCATCACAGAGAGGTTGAAGAAGTCCGGATCAGGGCCCAATGGGCCCAGCAGCAGCACTTCTTCCACCAGATCGGAGGAACAGCGATCCGCGATCGCCAACCAATCGGAGTTCAATAGAAGGGCCTCCAAAATCGGATACGGAATTCACCAAACGTCTCAGAAACTCGCCAAACTCGCCAAGTTGGCGAAGAGGACGTCGGTTTTTGATGACCCTACTATGGAAATCCAAGAGCTTACGGGGGTTATTAAGCAGGATATTACTGCTCTGAACTCTGCCGTTGTGGATCTTCAGTTTCTGTGTAACTCTAGGAATGAGAGTGGGAATGTTTCCGCCGACACCACTAGCCATTCGAGCACTGTGGTCGATGACTTGAAAACACGGTTGATGAGCACCACCAAAGAGTTTAAGGATGTTCTCACCATGAGAACTGAGAACATGAAAGTGCATGAGAATAGAAGACAGTTGTTTTCATCTTCTGCATCTAAGGATTCTGCAAATCCTTTTATTCGGCAACGGCCGTTGGCTGCAAGGGCGGCTGCTAGTACTTCTAATGCCCCTGCTCTTCCCTGGGCTAATGGGTCACCATCTTCATCTCAGGCGTTTCCTAAGAAGCAAGTGGATGGGGAGAGTCAACCATTGTTGCAACAACAGCAGCAGCAGCAGGAGGTAGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCACGAGCTTAGCAACATTTTTAATCAGCTTGCAACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAAAACATGGACGATACATTGGCAAACGTAGAGGGAGCACAAGGGGCTTTGCTGAAGTATCTGAACAGCATATCTTCTAATCGGTGGTTGATGATCAAAATTTTCTCTGTGTTAATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG

Predicted protein sequences of Glyma06g07770

Limit To All Plant Sequences

>Glyma06g07770.1   sequence type=predicted peptide   gene model=Glyma06g07770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHAKSAQSSFRDRTQEFHSITERLKKSGSGPNGPSSSTSSTRSEEQRSAIANQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQFLCNSRNESGNVSADTTSHSSTVVDDLKTRLMSTTKEFKDVLTMRTENMKVHENRRQLFSSSASKDSANPFIRQRPLAARAAASTSNAPALPWANGSPSSSQAFPKKQVDGESQPLLQQQQQQQEVVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFSVLIFFLMVFLFFVA*

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