Glyma06g07750 - SoyBase

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Report for Sequence Feature Glyma06g07750

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5685837
stop:	5688784
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g07750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25670	AT	Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928 proteins in 1799 species: Archae - 86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses - 259; Other Eukaryotes - 13792 (source: NCBI BLink). \| chr2:10929062-10930619 REVERSE LENGTH=318	SoyBase	E_val: 2.00E-54	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B9DH39	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT2G25670 protein n=1 Tax=Arabidopsis thaliana RepID=B9DH39_ARATH	SoyBase	E_val: 4.00E-57	ISS
UniRef100_I1K910	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K910_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g07750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g07750

Paralog	Evidence	Comments
Glyma04g07650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g07750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g073800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g07750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g07750

Limit To All Plant Sequences

>Glyma06g07750.1   sequence type=CDS   gene model=Glyma06g07750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGGAGGTGGAAGCAGGAGGGATGAAGGGTCGTTGGTGTTGAACAACACGAACGTGTTTGCAGCGCTGGATACTCTGAAGAAGAAGAAGAAGTCCGATAAGGAGAAGAAGAGCAAGGGCTCGTCGACGAAATCGCAGGCCCAGTCCGCGAAGGCTGAGGCCCCAGTGTTTTGGGCCCCGGCGCCGCTGAACGCCAAGTCCTGGGCCGACGTCGACGACGAGGACGACGACGATTACTACGCCACCACGGCGCCGCCCCAATCGGTGTGGGGCGTTTCTGAACCTCATCACAGTAAGGAGGACAAACATGGGAATTTTGAGGAAAGTGAGAGTGAGGAAGATATTTTGGATGAAGGGGATGATGAGGTTGAGGAAGAGCATGATCATGAACCAGAAGAATCTTTGAAACCTGAACATGAGGTTAAGAAGGATACTGAAGTCCCTTTGCCGCCACCAAAGGAGACAGAAAGGCAGCTCTCTAAAAAGGAAAGGAAGAAGAAGGAACTTGCAGAACTTGAGGCTCTTCTAGCTGATTTTGGAGTGGCGCCAAAACAAAGTAACGATGGTCAAGATGAGTCTCAAGGTGCTCAGGATAAGAAAGGTGTTGAGACTGATGGAGATGGAGAAAAGAAAGAAAATGTCCCTGCAGAATCCAAAACTTCCAAGAAGAAGAAGAAGAAGGATAAAGCTTCCAAGGAGGTGAAAGAATCTCAAGATCAACCCAACAGTTCAGACACAAACAATGGGCCTGATTTGGCCACAGGCGCTGAAAATGTGGAGGATACATCTACTGTTGATGTGAAAGAGCGTCTCAAGAAAGTTGCTTCTACAAAGAAGAAGAAGTCCAGTAAAGAAATGGATGCTGCTGCAAGAGCTGCTGCTCAAGAGGCTGCTGCAAGGAGTGCAAGGCTTGCTGCTGCAAAAAAAAAAGAGAAGAACCATTATAACCAGCAACCCGTCCGGTAA

Predicted protein sequences of Glyma06g07750

Limit To All Plant Sequences

>Glyma06g07750.1   sequence type=predicted peptide   gene model=Glyma06g07750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGGGSRRDEGSLVLNNTNVFAALDTLKKKKKSDKEKKSKGSSTKSQAQSAKAEAPVFWAPAPLNAKSWADVDDEDDDDYYATTAPPQSVWGVSEPHHSKEDKHGNFEESESEEDILDEGDDEVEEEHDHEPEESLKPEHEVKKDTEVPLPPPKETERQLSKKERKKKELAELEALLADFGVAPKQSNDGQDESQGAQDKKGVETDGDGEKKENVPAESKTSKKKKKKDKASKEVKESQDQPNSSDTNNGPDLATGAENVEDTSTVDVKERLKKVASTKKKKSSKEMDAAARAAAQEAAARSARLAAAKKKEKNHYNQQPVR*

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