Glyma06g07740 - SoyBase

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Report for Sequence Feature Glyma06g07740

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5664199
stop:	5683567
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g07740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25660	AT	Annotation by Michelle Graham. TAIR10: embryo defective 2410 \| chr2:10916456-10927390 REVERSE LENGTH=2166	SoyBase	E_val: 0	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04357	PFAM	Family of unknown function (DUF490)	JGI		ISS
UniRef100_D7LBF6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EMB2410 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LBF6_ARALL	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A184	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A184 related cluster n=1 Tax=unknown RepID=UPI000233A184	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g07740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g07740

Paralog	Evidence	Comments
Glyma04g07640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g07740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g073700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g07740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g07740

Limit To All Plant Sequences

>Glyma06g07740.2   sequence type=CDS   gene model=Glyma06g07740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACTTTGTTTTTTGGGATAAAGCTTCGTGCTTCTTTGCAAGGTAACAACACTATCAAAAGGGTTTTCCCCAGAAGCAAGAGGTGCAACGTTTCTGCAAAACACGTTCGTTACCCATTGAGGCATGCTTTTAGGTTTTGTGGCCAAAATGTAAACTTGTTGAAGAAACACCATGTTTCCGCAAGTTGGTCTAGGTTGAAATGTTTCAGGGAAAAGGAACCACCCTTTTCTCTCAGTGTGAGTTATTTCACCCCATTGTGGAAAGAGGGGGTTCTTTTGATGAGGGCCTCTGTGTTCACTGCTGTTATCTCTGGTTTGTGTCTTTTGGTTTGGTTTGGAAGGAACAAAGCCTGGGGTTTTGTTGAAACAAATATCTTGCCTTCTGTTTGTTCAGTGATCAGTGAGTATGTTCAGCGCGATGTTTGCTTTGGCAAGGTTTTGAGAATCTCACCCTTGAGTGTAACATTGGAGTCATGTTCATTTGGGCCGAATGAAGAGGAGTTTTCTTGTGGTGAGGCTCCCACCGTGAAGGTTCGTTTTCGCCCTCTTGCTAGCCTGTGGAGGGGGAAATTTGTGTTTGATGCAGTATTGTCACATCCGTGTGTCTTGGTAGTGCAGAAGAAAGACTTTAGTTGGTTAGGCATACTGCCATCTCAAGGGGGCATTCAGAGGCGCTTGTCAACCAAAGAAGGACTTGATCATCGCACTAGAGTGAGGAGGGTTGCTCGAGAGGAGGCAGCTGCTAAATATGTGAGAGAAAGGGATGATGCAGCTAGGGAAGCTGCAGAGATGGGTTACTTTGTTTCTGAGAAGAATTGTGGTCCATCCAAGGGCGATGACGATTTAAAGGAAATTGCAACTCATTCAGTAGGAGGAACAAACTCCAAGAGTTTTTTCTGCATGAAGGAGGTGGAGCAGCATGGTCATCGTTGCGTGGGCACAGGTGTTGATTATGATATGAAACATGCTGATTTGGAGGAGTCATTTAGGGTAAAGTTTCCTGAAAAAGGACTTAAGTTTTGGAAAAGAGTCATAAAAGGGCATAGAAAACACAAATTTAAGCCGAAGGCTAAAAGGAGTGACATCAGTGCATCTGGTATTGCTCTCAGAAAAAGAATTCTTGAACGCGGTGCATTTGCAGCAAATGCATACTTTCGCAGTCAATCACATGGGAAGTTTGAGCAGCCTTTGTCTTCTTCTGGATGTTTTCATGCTAGAGATCATGATAGGCAATTGGTAAAAAGTGATGACAAAAATGATGTATCTGTTGCCAGTGGTGATGATAATAGAAATGGTGATCACCGAAATGGAACACAATTCAGAGATCTGGGAGTCTGGTCTCCTTCAGCTAATGAAAATATTAATGGTCATTCAAATGATTTAAATTTTTGCAGTGATCTGCATTCACAGACAAGGGAGAGTAAACATGAAAATTTACAATCTAGTGAGGATGTTGCAGAACATGCCAATGCTAATATTAGTACAGAGAAAAAGGAGGAGTTGGGACTTCATGTTGCACACAGTCCAATTGATGTTAGTGCAACTAGGGGCCAAAGAGATTTGGTTTCTGTGAAGCCTAGTTCTCTGTTGGCAGCATATTTTCACGTTCCGTTTGAGACCTTGATTATGAAATTTGGCTTAAACTCGTTTTTTAGAAACATTGAGGGGTTGAAATCTTTCTTCCTTTCTGGTCCCATTGAAAAGTTGAAGTCTGAAATGGGTCTGAAAGTTGAAGGTACTGTTTCTGAAAATGTAGATGGGGTAGATGTTCTGCAGTCTGAAGACCTAACTAAGATTCTTCCTGTTACATTGGATTCTGTTCAATTTAGAGGTGCAACTGTGATGCTACTTACATATGGTGACAGGGAAGTTAGGGTGCTGGAGAATGTCAATGGCCATGTGAAGTTTCATAACCACTACGACCATATAAATGTAAAACTGAGTGGAAATTGTAAGACTTGGAGATCAGATGATATATGTGAAGGTGATAGCTGGTTGTCTGTTGATGTTTTTGTTGACACTGTTGAGCAGAAATGGCATGCAAATTTGAAAATTGACCACTTTTTTGTCCCGCTGTTTGAAAGGATCCTAGACATTCCAATTACATGGTCTAAAGGAAGGGCCAGCGGTGAGGTTCACTTGTGCATGTCAAAGGGTGAAACTTTTCCAAATCATCATGGACAGCTTAACGTAACAGGGTTGAACTTCCAACTATCAGACGCTCCATCGTGTTTTTCCAACATATCAGGAAGTTTATGTTTTCGTGGTCAAAGTATATTTTTACACAATGCATGTGGCTGGTTTGGCAGCATTCCTCTAGAAGCATCAGGAGATTTTGGCATTCATCCCGAGGAAGGAGAATTTCATCTTATGTGTCAGGTTCCTAGTGTTGAAGTGAATGCTTTGATGAGAACTTTCAATATGAGATCTCTCTCGTTCCCATTAGCAGGGTCGATAACTGCTCTATTTAACTGTCAAGGCCCACTGGATACTCCTATATTTGTGGGAACTGGAATGGTTTCTAGGACATTCTCTTCTTTGCATGTTGATACTCCTACAACTGTAGCATCTGAAGCACTTGCTAAAAGTAAGGAGGCTGGAGCGTTGGCAGCATTTGATCGTGTACCATTTTCACATGTATCTGCTAATTTCACTTTCAACACTGATAGCTGTATTGCTGATTTGTATGAAATTAGAGCAAGCCTTGTGGACGGTGGTGAAATTCGAGGGGCTGGGACAGTATGGATATGCTCAGAGGCTGAGAATGATGAGACAGCAATAGATGCAAACTTCTCTGGAAGTTTGGCCTTTGAAAAAATTATGCTTCGCTATATTCCCAGTTATCATCATTTGATGCCACTCAAATTTGGAGTTTTAAGTGAAAACACAAAACTTTCAGGGTCTCTTTTAAGACCGAGGTTTGATATAAAATGGACTGCATCGAAAGCAGAAGGATCTTTTAGTGATGCTAGAGGAGATATCATAATCTCAGATGATTTCGTTACTGTTAATTCTGCTTCAGCTGCATTTGATTTGTATATGAAAGTTCAAACATCTTATTCTGATAATTTTTCTCTTAAAAGAGAAGAGTTTTATGCACCAAGAGCCATTCCATTTACCGTTAGTGGAGTTGAGTTTGATTTGCACATGCGTGGATTTGAATTCTTTAGTTTGGTCACTCCTTATACATTGGATTTTCCAAGACCTTTGATTTTGAAAGCAACCGGAAGGATCAAGTTTCAGGGAAAGATTTTAAAACCTAGTACCACTGTTATTGAACAAAATTTTGACAAGAACAAGCAGCATGTGCAAATGTTGGAGAAAGGAAGTGCAGATAGTCTTGTTGGTGAGGTTTCAATCTCTGGTCTCAAATTGAATCAATTGATGCTTGCACCTCAAATGTCTGGGTCGTTGAGTGTTTCTCCCGAGAGTATCAAGTTGAATGCCTCTGGTAGGCCTGATGAAAGTCTTGTGATGGATTTTGTTGGGCCACTACAGCTCAGTGGTGAAAGTGGTCTGAAAAGTGGACAACTGGTGTCCATTTCCCTTCATAAGGGGCAGTTGAGGGCAAACGTAGATTTTCAACCATGTCATTCAGCTAGCTTGGAGGTATGGCATTTTCCACTTGATGAGCTGGAGCTTGCTTCTCTCAAGGGAACTATACAGTGGGCAGAAATCCAGCTTAATCTTCGAAAAAGAAGAGGACATGGAATCATATCTATACTTCGGCCAAAATTCAATGGAGTGCTTGGTGAAGCCCTGGATGTGGCAGCTAGGTGGAGTGGAGATGTTATCACTATTGAAAAAACTATTTTGGAACAAAGCTACAGTTATTATGAAATGCAAGGCGAATATGTATTACCTGGCACTCGAGATCATAACCCTGTTGACATAAAAGGCGATGGCTTTTTAAAAAGCTTCTTATCTGGGCATTTTGGTAGTGTTATATCCTCGATGGGTAGGTGGAGAATGAAACTCGATATTCCCAGAGCTGAAGTTGCTGAGATGCTCCCTCTTGCAAGGCTACTTTCTCGAAGTATGGATCCTGCTGTTCTTTCAAGATCAAAGGATTTTTTTATTCAAAGTCTGCAGTCGATGGGATTATATTCTATGAGCACTCAACAACTGCTTGAGTTAAGAAGGGAGCATCATGCTCCGTCAAATGATGTTCTTGATGATTTGAGCCTTCCCGGTTTACTTGAACTCAAAGGTCGCTGGCATGGTTCTCTCAATGCCAGCGGTGGAGGGAATGGAGACACCCTGGCAGAATTTGACTTTCATGGGGAGGACTGGGAGTGGGGAGAATACAAAACTCAGCGTGTCTTGGCAGTTGGTACTTATAGTAATGATGATGGTTTGAACCTGGAGAAGTTTTTTATCCAGAAGGAAAATGCCACAATTCATGCTGATGGAACTTTGTTAGGACCTAAATCCAACCTTCATTTTGCTGTCTTAAACTTTCCTGTTAGTCTGATACCAACAGTAGTTCAGATCATTGACTCTACATCATCCAATGTTGCTCATTCTCTGCGGCAATTGTTAGCACCCATTAGGGGGATCTTGCATATGGAAGGAGATCTTAGAGGAAGTTTAGCAAAACCAGAATGTGATGCTCAAATTAGGCTACTTGATGGCGCCATTGGTGGAATTGTTCTTGAACGAGCAGAAGTCGTTACCTCTCTAACCTCAACCAGTCACTTTCTATTCAATGCAAAATTTGAACCTTTGATCCAGAATGGTCATGTACTAGTTCAAGGAGCTATTCCTGTTACTTTTTTTCAAAGTAACATGTTACAGCAAGATGTGGAATTAGATAAGAGTAGGACTACTTGGGTTCCTGAATGGGTGAAAAAGAAGAGCATGGGGACTACCGATGATGCCAGAGACAAAAAAGTTTCTAGACGCAGAAATGAAGAAGGTTGGAATACTCAATTAGCTGAAAGCCTTAAAGGTTTAAATTGGCAAATTTTAGATGTTAGAGAAGTCAGGGTTGATGTTGATATAAAAGATGGGGGAATGATGCTGGTAACAGCTTTAACTCCTTATGCCAATTGGCTTCATGGCAGTGCTGATATCATGCTTGAGGCCAGAGGTACAGTTGATCAACCAGTGCTTAATGGATATGCATCATTCCGCAGGGCATCTATATCTTCACCGGTGTTCCGAAATTCACTGACCAACTTTGGTGGAATTGTGCACATGAAATCAAACAGGTTATCCATTCCCTCACTGGAGAGTAGGATAGGCAGAAAAGGAAAGCTTCTTGTAAAGGGGAATCTTCCCCTCAGAACTAAGGAACCAGCTCTCAATGACAAGATCGAGTTTAAGTGTGAAGTTCTAGAAGTGCAGGCAAAAAATATTTTAAGTGGCCAGGTTAACTCCCAGGTGCAAATAACTGGTTCCATATTGCAACCTAACATTTCTGGAAATATTAAACTTAGTCAGGGAGAAGTATATTTGCCACATGATAAGGGTGGTGCTGCTTCCAATGGATTCCCATCTTATCCATCTGCAGTTCCCCGTGGTGGCATTGATAAATCATATGCTTCAAGATATATTTCACAGTATTTTGGCTCAGAATCTGCTTCTCTGATGGCCAAAAATTCCCAATCCTCTGGCTCTGTCAATGAGTCAATTCAGGTGGAAAAGGATATGGAGGAAGTGCAGATAAAACCAAATATAGGAATCCGCCTTAGTGATCTGAAGCTTGTGCTTGGACCAGAGTTGAAGATAGTTTATCCTTTCATCCTTAATTTTTCTGTTAGTGGAGAGCTTGAGTTGAATGGTCTTGCCCATCCCAAATGCATAAAACCTAGGGGCACACTGGCATTTGAGAATGGAGAAGTTGATCTAGTCGCAACGCAGGTGAGGTTAAAACGGGAGCATCTCAATGTTGCAAGGTTTGAACCTGATAATGGACTAGATCCTATGCTAGATTTAACCTTGGTTGGATCTGAGAGGCAATATAGAATTCATCATCGAGCTAGCAATTGGCAGGAGTTTGTAGAACAGGATACACTGTCACCAATTGAGGTTGCCAGAAGACTTGATAGTCAGTTAGCAGAATCCATTTTGGAAAACAATGGTCATGTTGCATTTGAAAAGGTTGTAACTGCTACTCTTGAAAAACTAATGCCACGAATAGAAGGGAAGGGAGAGTTTGGCCTGGCTAAGTGGAAGTTGGTTTACGCTCCCCAGATTCCTAGTTTGGTTTGTTCTGGTGCTACAGTAGATCCTTTCACGTTACTTGCTGCTAATTTATCATTTGGTACGGACGTTGAAGTCCAGCTTGGGAAACATATTCAGGCCAGAATCGTTAGGCAAATGAAGGAGTCACAGATGGCAATGGAATGGACCTTGACCTATGAACTTACAAGTCGTTTGCATCTGTGTCTAAAGAATGGCTCATCCAAATGCATACTTTTTGAGTATTCTGCATCCCAGGATTAA

Predicted protein sequences of Glyma06g07740

Limit To All Plant Sequences

>Glyma06g07740.2   sequence type=predicted peptide   gene model=Glyma06g07740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTLFFGIKLRASLQGNNTIKRVFPRSKRCNVSAKHVRYPLRHAFRFCGQNVNLLKKHHVSASWSRLKCFREKEPPFSLSVSYFTPLWKEGVLLMRASVFTAVISGLCLLVWFGRNKAWGFVETNILPSVCSVISEYVQRDVCFGKVLRISPLSVTLESCSFGPNEEEFSCGEAPTVKVRFRPLASLWRGKFVFDAVLSHPCVLVVQKKDFSWLGILPSQGGIQRRLSTKEGLDHRTRVRRVAREEAAAKYVRERDDAAREAAEMGYFVSEKNCGPSKGDDDLKEIATHSVGGTNSKSFFCMKEVEQHGHRCVGTGVDYDMKHADLEESFRVKFPEKGLKFWKRVIKGHRKHKFKPKAKRSDISASGIALRKRILERGAFAANAYFRSQSHGKFEQPLSSSGCFHARDHDRQLVKSDDKNDVSVASGDDNRNGDHRNGTQFRDLGVWSPSANENINGHSNDLNFCSDLHSQTRESKHENLQSSEDVAEHANANISTEKKEELGLHVAHSPIDVSATRGQRDLVSVKPSSLLAAYFHVPFETLIMKFGLNSFFRNIEGLKSFFLSGPIEKLKSEMGLKVEGTVSENVDGVDVLQSEDLTKILPVTLDSVQFRGATVMLLTYGDREVRVLENVNGHVKFHNHYDHINVKLSGNCKTWRSDDICEGDSWLSVDVFVDTVEQKWHANLKIDHFFVPLFERILDIPITWSKGRASGEVHLCMSKGETFPNHHGQLNVTGLNFQLSDAPSCFSNISGSLCFRGQSIFLHNACGWFGSIPLEASGDFGIHPEEGEFHLMCQVPSVEVNALMRTFNMRSLSFPLAGSITALFNCQGPLDTPIFVGTGMVSRTFSSLHVDTPTTVASEALAKSKEAGALAAFDRVPFSHVSANFTFNTDSCIADLYEIRASLVDGGEIRGAGTVWICSEAENDETAIDANFSGSLAFEKIMLRYIPSYHHLMPLKFGVLSENTKLSGSLLRPRFDIKWTASKAEGSFSDARGDIIISDDFVTVNSASAAFDLYMKVQTSYSDNFSLKREEFYAPRAIPFTVSGVEFDLHMRGFEFFSLVTPYTLDFPRPLILKATGRIKFQGKILKPSTTVIEQNFDKNKQHVQMLEKGSADSLVGEVSISGLKLNQLMLAPQMSGSLSVSPESIKLNASGRPDESLVMDFVGPLQLSGESGLKSGQLVSISLHKGQLRANVDFQPCHSASLEVWHFPLDELELASLKGTIQWAEIQLNLRKRRGHGIISILRPKFNGVLGEALDVAARWSGDVITIEKTILEQSYSYYEMQGEYVLPGTRDHNPVDIKGDGFLKSFLSGHFGSVISSMGRWRMKLDIPRAEVAEMLPLARLLSRSMDPAVLSRSKDFFIQSLQSMGLYSMSTQQLLELRREHHAPSNDVLDDLSLPGLLELKGRWHGSLNASGGGNGDTLAEFDFHGEDWEWGEYKTQRVLAVGTYSNDDGLNLEKFFIQKENATIHADGTLLGPKSNLHFAVLNFPVSLIPTVVQIIDSTSSNVAHSLRQLLAPIRGILHMEGDLRGSLAKPECDAQIRLLDGAIGGIVLERAEVVTSLTSTSHFLFNAKFEPLIQNGHVLVQGAIPVTFFQSNMLQQDVELDKSRTTWVPEWVKKKSMGTTDDARDKKVSRRRNEEGWNTQLAESLKGLNWQILDVREVRVDVDIKDGGMMLVTALTPYANWLHGSADIMLEARGTVDQPVLNGYASFRRASISSPVFRNSLTNFGGIVHMKSNRLSIPSLESRIGRKGKLLVKGNLPLRTKEPALNDKIEFKCEVLEVQAKNILSGQVNSQVQITGSILQPNISGNIKLSQGEVYLPHDKGGAASNGFPSYPSAVPRGGIDKSYASRYISQYFGSESASLMAKNSQSSGSVNESIQVEKDMEEVQIKPNIGIRLSDLKLVLGPELKIVYPFILNFSVSGELELNGLAHPKCIKPRGTLAFENGEVDLVATQVRLKREHLNVARFEPDNGLDPMLDLTLVGSERQYRIHHRASNWQEFVEQDTLSPIEVARRLDSQLAESILENNGHVAFEKVVTATLEKLMPRIEGKGEFGLAKWKLVYAPQIPSLVCSGATVDPFTLLAANLSFGTDVEVQLGKHIQARIVRQMKESQMAMEWTLTYELTSRLHLCLKNGSSKCILFEYSASQD*

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