Glyma06g07680 - SoyBase

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Report for Sequence Feature Glyma06g07680

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5620791
stop:	5624282
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g07680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25510	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2A regulatory B subunit family protein \| chr5:8882728-8884325 REVERSE LENGTH=500	SoyBase	E_val: 0	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0000159	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein phosphatase type 2A complex	SoyBase	N/A	ISS
KOG2085	KOG	Serine/threonine protein phosphatase 2A, regulatory subunit	JGI		ISS
PTHR10257	Panther	PROTEIN PHOSPHATASE 2A, REGULATORY SUBUNIT	JGI		ISS
PTHR10257:SF3	Panther	gb def: putative protein phosphatase 2a regulatory subunit b [oryza sativa]	JGI		ISS
PF01603	PFAM	Protein phosphatase 2A regulatory B subunit (B56 family)	JGI		ISS
UniRef100_G7JBQ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform n=1 Tax=Medicago truncatula RepID=G7JBQ2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K903	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K903_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g07680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g07680

Paralog	Evidence	Comments
Glyma04g07560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g07680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g073000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g07680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g07680

Limit To All Plant Sequences

>Glyma06g07680.1   sequence type=CDS   gene model=Glyma06g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCAAGCAATTCCTCAGCAAACTCCCTCGCAAGGCACCGAAACCCGACTCGGACGAGTCATGCCGAGCCGACTCGTCGAGCTCGGACGATTCCCCACACGCCGCCGGCAGAAACACCCGCCCTCCCGGCGGCGGAGGAGCTTCCGGCGCCGCGAAGAAAGCATCCTCGTCGGCGGTTTTTCCGGCGAGCACGGTGTCGTTGATTGAACCTTTGGTGCCGTTTAAGGATGTTCCGAGTTCCGAAAAGATGAACCTTTTCGTGAGCAAGCTTAGCCTGTGTTGTGTCACGTTCGATTTCACGGACCCTGGTAAGAACACGGTGGAGAAAGAGGTGAAGAGAAGAACCCTTGTTGAACTCGTTGATTTCGTTTCCTCTTGTGGGTCCTCGAGGTTCGGTGAACCTGCTATTCTTGCTGTTTGCAGAATGTGTGCTATTAATCTCTTCCGTGTTTTCCCGCCAAATTATAGGTCCAATCGTGGTGGTGAGAATGATGATGATGAGCCAGCATTTGATCCCGCTTGGCCTCATTTGCAGCTTGTGTATGAATTGCTGCTTAAGTTTATAACCTCAAATTGTCTCGATGCTAAGGTGGCTAAGAAGTACATTGACCATTCGTTTATTTTAAGTTTGTTGGAGTTGTTTGATTCGGAGGATCCTAGGGAGAGGGACTGCTTGAAGACGATTCTGCATAGGGTTTATGGCAAGTTCATGGTGCATAGGCCCTACATAAGGAAATCTATTAACAACTTGTTTTATAAGTTTGTGTTTGAGACTGAGAGGCACAATGGGATTGCGGAGTTGTTGGAGATCTTTGGGAGCATAATTAGTGGGTTTGCTTTGCCTCTGAAGGAGGAGCACAAGATCTTCTTGTGGAGGGTTTTGATCCCCTTGCACAAGCCCAAGTCTATCGGGGTGTACTTCCAGCAGTTGTCTTATTGCGTTACGCAGTTTATCGAGAAAGAGCCCAAGTTGGCAAGCATTGTGATAAGGGGGATGTTGAAGTATTGGCCTGTAACCAACAGTCAGAAAGAGGTGATGTTCCTGGGTGAACTGGAGGAAATTTTGGAAACAATTAACATGGTAGAGTTCCAGAGGGTCATGGTCCCGTTGTTTTGGCGGATTGGATGCTGCATTAACAGTTTGCACTTCCAGGTAGCTGAAAGAACCCTTTTCTTATGGAACAACGACCATATTGTCAACTTGATCGCTCACAACCGACAAGTGATCCTGCCAATCATATTTCCAGCCTTAGAGAAGAATTCTCAGGGCCACTGGAGCCAGGCAGTGCTCAACCTAACTCATAACGTGAGAAAAATGTTTGTGGAGATGGATGAGAAGCTGTTCCTGGCTTCTCATTCTCAGTTCAAGGAAGAAGAAGCAATGCTAAACACAGCAGCGGAGAAGCGGAAGGAAGCATGGAAACAACTAGAGCATGCAGCCAGTCTCCAGCCTGTGACTGGAAATACCCCAGTTTTAGTGTCTCCAATTTGA

Predicted protein sequences of Glyma06g07680

Limit To All Plant Sequences

>Glyma06g07680.1   sequence type=predicted peptide   gene model=Glyma06g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKQFLSKLPRKAPKPDSDESCRADSSSSDDSPHAAGRNTRPPGGGGASGAAKKASSSAVFPASTVSLIEPLVPFKDVPSSEKMNLFVSKLSLCCVTFDFTDPGKNTVEKEVKRRTLVELVDFVSSCGSSRFGEPAILAVCRMCAINLFRVFPPNYRSNRGGENDDDEPAFDPAWPHLQLVYELLLKFITSNCLDAKVAKKYIDHSFILSLLELFDSEDPRERDCLKTILHRVYGKFMVHRPYIRKSINNLFYKFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLWRVLIPLHKPKSIGVYFQQLSYCVTQFIEKEPKLASIVIRGMLKYWPVTNSQKEVMFLGELEEILETINMVEFQRVMVPLFWRIGCCINSLHFQVAERTLFLWNNDHIVNLIAHNRQVILPIIFPALEKNSQGHWSQAVLNLTHNVRKMFVEMDEKLFLASHSQFKEEEAMLNTAAEKRKEAWKQLEHAASLQPVTGNTPVLVSPI*

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