Glyma06g07665 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma06g07665): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma06g07665): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma06g07665

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5614139
stop:	5619957
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g07665

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11300	AT	Annotation by Michelle Graham. TAIR10: mitotic-like cyclin 3B from Arabidopsis \| chr5:3601811-3604466 REVERSE LENGTH=436	SoyBase	E_val: 7.00E-151	ISS
GO:0000079	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0010389	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0051302	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell division	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:2000123	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of stomatal complex development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016538	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase regulator activity	SoyBase	N/A	ISS
GO:0019901	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase binding	SoyBase	N/A	ISS
KOG0654	KOG	G2/Mitotic-specific cyclin A	JGI		ISS
PTHR10177	Panther	CYCLINS	JGI		ISS
PTHR10177:SF49	Panther	G2/MITOTIC-SPECIFIC CYCLIN	JGI		ISS
PF00134	PFAM	Cyclin, N-terminal domain	JGI		ISS
PF02984	PFAM	Cyclin, C-terminal domain	JGI		ISS
UniRef100_Q39878	UniRef	Annotation by Michelle Graham. Best UniRef hit: Mitotic cyclin a2-type n=1 Tax=Glycine max RepID=Q39878_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q39878	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitotic cyclin a2-type n=1 Tax=Glycine max RepID=Q39878_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g07665

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g07665 not represented in the dataset	Glyma06g07665 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g07665

Paralog	Evidence	Comments
Glyma04g07551	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g07665 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g072900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g07665

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g07665

Limit To All Plant Sequences

>Glyma06g07665.2   sequence type=transcript   gene model=Glyma06g07665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAGAATGTTAAGAGAAAAAAAGCCCTTGATTGAAAATCATGATGTAGCATTAGGCCATTCTTAGGCACTGTTTTTTGATTGTTATAATCCAATTATCTAATGAATGGGTGTTAATTTGGTGTTTAAAGAACAGGTATGAGCAAGATTTTCATTTGAAAGAATTGGGTTGCTCTTCTTCGAGGCACACACAATGGATAAAGTAAATAGAGTTTGTGCCAAAGATGAAGAGCGTCCACTCCGAATCACCAGAGCAAGAGCTAGAGCCTTGAGAGGGATTACTCCATACTCAAGACCCTCCTTAAAAAATGAGCAGAAAAATGTGCTTCGAGCACATCCGAAAAGAGCAGCATCTTCTGAAAACAAAACTTCTGTGGTTGTTCCTGCTGTTGTCCAACAGAAGGGAAGGGCAGTGCTTTCAGATGTATCAAACATGTGTGCAAAACCACATGATAAGTGTACTAAGTCATCAAAGTTTCAGGCCAAAGGAGTTTATACAAAGAAAACCACCAAGCTAGCAGCCTTAGGTGTTTCCACTGAGGTTTCATCAACACAAGAGAATGTTAGAGCAAAGTTGGCTGAAGAATTATCCACAATAAGGATGGTAGAATCAAAGGACACCATAAGAGAAGGTGTTACAGCAGACACTGCACTTTCAATGCAAAACTCTCTGAAATCTGATGAGCTCCAGAGCTCTCCAAACAAAGACATACATATGATTTGGGAGAAGCTAGGAGCCTCAGACTCCCTGACTATTGTGGACATTGATTCTGAGTTAAAGGATTCTCAAGTTTGGAGTTCTTATGCCCCTGACATATACAGCAATATTCAAGTCACAGAGCTTCAAAGGAAACCAGTGGCCAACTACATGGATAAGCTGCAGAAAGATATTAATCCAACTATGCGAGGAATTCTGGTTGATTGGCTTGTCGAGGTTTCTGAGGAATACAAGTTGGTTCCAGACACACTTTACCTGACCGTGAACCTCATTGATCGGTATCTCTCAACAAGGCTCATTCAGAAGCAAAGGCTCCAGTTGCTTGGTGTTACTTGCATGCTGATTGCATCAAAATACGAAGAGATTTGTGCACCTCGAGTGGAGGAATTTTGCTTCATCACAGATAATACATACTCAAAAGAAGAGGTATTGAAAATGGAGAGAGAAGTACTGGATCTTGTGCATTTTCAGTTATCTGTTCCCACAATCAAAACTTTTCTAAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTGCGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAATGCAACTTTTTCCAGTTTCTACCTTCCCTTGTAGCTGCATCCGCTGTGTTCCTTGCCAAATGGACCCTGAATGAGTCAGAACATCCATGGAATCCAACTCTGGAGCACTATACAAAATACAAAGCTTCAGAGCTCAAGACTGTTGTTCTTGCACTGCAAGATCTGCAACTTAATACCAAAGGAAGCTCCCTGAATGCTGTCCCTGAGAAGTATAAGCAACAGAAGTTCAATTGTGTGGCAAACTTGTCTCCAAAACCGGTGCAGTCACTCTTCCAGGACAAAGTGTAAATGTTTTTGGCTGCTCCCATATTAAAGACTTAAAGGATGAGTTGAGAGAATTTCTGGCAGTGATGGTTGAAACCATCATCATCAGTTGTTACATATTTCACCATTCTTTTCATCATCAATCCCCCACTTAGTAAGTAGTGTCTGTTCCGTAATTGTAACATGTAAGATGATGTCAAATTTCTGGTTCTTCCAGATCTCTTTGTTTTGTAAAGGGAAAACTGTTGCGGGATGATACAGTTCAAAGAGTGAGTTGATGTACTAACACCAATTAGGCTCATTAAGCAACAAAGTCGTATAGTTGCTTGCTCTCAACATTTTGTACTGAAACATTTGTAATGTAATAAAAATTACATTACATACAATTTATTTTCTATTTCTAGATTACCGTTTTACATTTGC

Coding sequences of Glyma06g07665

Limit To All Plant Sequences

>Glyma06g07665.1   sequence type=CDS   gene model=Glyma06g07665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAAGTAAATAGAGTTTGTGCCAAAGATGAAGAGCGTCCACTCCGAATCACCAGAGCAAGAGCTAGAGCCTTGAGAGGGATTACTCCATACTCAAGACCCTCCTTAAAAAATGAGCAGAAAAATGTGCTTCGAGCACATCCGAAAAGAGCAGCATCTTCTGAAAACAAAACTTCTGTGGTTGTTCCTGCTGTTGTCCAACAGAAGGGAAGGGCAGTGCTTTCAGATGTATCAAACATGTGTGCAAAACCACATGATAAGTGTACTAAGTCATCAAAGTTTCAGGCCAAAGGAGTTTATACAAAGAAAACCACCAAGCTAGCAGCCTTAGGTGTTTCCACTGAGGTTTCATCAACACAAGAGAATGTTAGAGCAAAGTTGGCTGAAGAATTATCCACAATAAGGATGGTAGAATCAAAGGACACCATAAGAGAAGGTGTTACAGCAGACACTGCACTTTCAATGCAAAACTCTCTGAAATCTGATGAGCTCCAGAGCTCTCCAAACAAAGACATACATATGATTTGGGAGAAGCTAGGAGCCTCAGACTCCCTGACTATTGTGGACATTGATTCTGAGTTAAAGGATTCTCAAGTTTGGAGTTCTTATGCCCCTGACATATACAGCAATATTCAAGTCACAGAGCTTCAAAGGAAACCAGTGGCCAACTACATGGATAAGCTGCAGAAAGATATTAATCCAACTATGCGAGGAATTCTGGTTGATTGGCTTGTCGAGGTTTCTGAGGAATACAAGTTGGTTCCAGACACACTTTACCTGACCGTGAACCTCATTGATCGGTATCTCTCAACAAGGCTCATTCAGAAGCAAAGGCTCCAGTTGCTTGGTGTTACTTGCATGCTGATTGCATCAAAATACGAAGAGATTTGTGCACCTCGAGTGGAGGAATTTTGCTTCATCACAGATAATACATACTCAAAAGAAGAGGTATTGAAAATGGAGAGAGAAGTACTGGATCTTGTGCATTTTCAGTTATCTGTTCCCACAATCAAAACTTTTCTAAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTGCGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAATGCAACTTTTTCCAGTTTCTACCTTCCCTTGTAGCTGCATCCGCTGTGTTCCTTGCCAAATGGACCCTGAATGAGTCAGAACATCCATGGAATCCAACTCTGGAGCACTATACAAAATACAAAGCTTCAGAGCTCAAGACTGTTGTTCTTGCACTGCAAGATCTGCAACTTAATACCAAAGGAAGCTCCCTGAATGCTGTCCCTGAGAAGTATAAGCAACAGAAGTTCAATTGTGTGGCAAACTTGTCTCCAAAACCGGTGCAGTCACTCTTCCAGGACAAAGTGTAA

>Glyma06g07665.2   sequence type=CDS   gene model=Glyma06g07665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAAGTAAATAGAGTTTGTGCCAAAGATGAAGAGCGTCCACTCCGAATCACCAGAGCAAGAGCTAGAGCCTTGAGAGGGATTACTCCATACTCAAGACCCTCCTTAAAAAATGAGCAGAAAAATGTGCTTCGAGCACATCCGAAAAGAGCAGCATCTTCTGAAAACAAAACTTCTGTGGTTGTTCCTGCTGTTGTCCAACAGAAGGGAAGGGCAGTGCTTTCAGATGTATCAAACATGTGTGCAAAACCACATGATAAGTGTACTAAGTCATCAAAGTTTCAGGCCAAAGGAGTTTATACAAAGAAAACCACCAAGCTAGCAGCCTTAGGTGTTTCCACTGAGGTTTCATCAACACAAGAGAATGTTAGAGCAAAGTTGGCTGAAGAATTATCCACAATAAGGATGGTAGAATCAAAGGACACCATAAGAGAAGGTGTTACAGCAGACACTGCACTTTCAATGCAAAACTCTCTGAAATCTGATGAGCTCCAGAGCTCTCCAAACAAAGACATACATATGATTTGGGAGAAGCTAGGAGCCTCAGACTCCCTGACTATTGTGGACATTGATTCTGAGTTAAAGGATTCTCAAGTTTGGAGTTCTTATGCCCCTGACATATACAGCAATATTCAAGTCACAGAGCTTCAAAGGAAACCAGTGGCCAACTACATGGATAAGCTGCAGAAAGATATTAATCCAACTATGCGAGGAATTCTGGTTGATTGGCTTGTCGAGGTTTCTGAGGAATACAAGTTGGTTCCAGACACACTTTACCTGACCGTGAACCTCATTGATCGGTATCTCTCAACAAGGCTCATTCAGAAGCAAAGGCTCCAGTTGCTTGGTGTTACTTGCATGCTGATTGCATCAAAATACGAAGAGATTTGTGCACCTCGAGTGGAGGAATTTTGCTTCATCACAGATAATACATACTCAAAAGAAGAGGTATTGAAAATGGAGAGAGAAGTACTGGATCTTGTGCATTTTCAGTTATCTGTTCCCACAATCAAAACTTTTCTAAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTGCGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAATGCAACTTTTTCCAGTTTCTACCTTCCCTTGTAGCTGCATCCGCTGTGTTCCTTGCCAAATGGACCCTGAATGAGTCAGAACATCCATGGAATCCAACTCTGGAGCACTATACAAAATACAAAGCTTCAGAGCTCAAGACTGTTGTTCTTGCACTGCAAGATCTGCAACTTAATACCAAAGGAAGCTCCCTGAATGCTGTCCCTGAGAAGTATAAGCAACAGAAGTTCAATTGTGTGGCAAACTTGTCTCCAAAACCGGTGCAGTCACTCTTCCAGGACAAAGTGTAA

Predicted protein sequences of Glyma06g07665

Limit To All Plant Sequences

>Glyma06g07665.1   sequence type=predicted peptide   gene model=Glyma06g07665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKVNRVCAKDEERPLRITRARARALRGITPYSRPSLKNEQKNVLRAHPKRAASSENKTSVVVPAVVQQKGRAVLSDVSNMCAKPHDKCTKSSKFQAKGVYTKKTTKLAALGVSTEVSSTQENVRAKLAEELSTIRMVESKDTIREGVTADTALSMQNSLKSDELQSSPNKDIHMIWEKLGASDSLTIVDIDSELKDSQVWSSYAPDIYSNIQVTELQRKPVANYMDKLQKDINPTMRGILVDWLVEVSEEYKLVPDTLYLTVNLIDRYLSTRLIQKQRLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYSKEEVLKMEREVLDLVHFQLSVPTIKTFLRRFIQAAQSSYKAPCVELEFLANYLAELALVECNFFQFLPSLVAASAVFLAKWTLNESEHPWNPTLEHYTKYKASELKTVVLALQDLQLNTKGSSLNAVPEKYKQQKFNCVANLSPKPVQSLFQDKV*

>Glyma06g07665.2   sequence type=predicted peptide   gene model=Glyma06g07665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKVNRVCAKDEERPLRITRARARALRGITPYSRPSLKNEQKNVLRAHPKRAASSENKTSVVVPAVVQQKGRAVLSDVSNMCAKPHDKCTKSSKFQAKGVYTKKTTKLAALGVSTEVSSTQENVRAKLAEELSTIRMVESKDTIREGVTADTALSMQNSLKSDELQSSPNKDIHMIWEKLGASDSLTIVDIDSELKDSQVWSSYAPDIYSNIQVTELQRKPVANYMDKLQKDINPTMRGILVDWLVEVSEEYKLVPDTLYLTVNLIDRYLSTRLIQKQRLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYSKEEVLKMEREVLDLVHFQLSVPTIKTFLRRFIQAAQSSYKAPCVELEFLANYLAELALVECNFFQFLPSLVAASAVFLAKWTLNESEHPWNPTLEHYTKYKASELKTVVLALQDLQLNTKGSSLNAVPEKYKQQKFNCVANLSPKPVQSLFQDKV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain