Glyma06g07615 - SoyBase

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Report for Sequence Feature Glyma06g07615

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5572874
stop:	5578324
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g07615

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32560	AT	Annotation by Michelle Graham. TAIR10: paramyosin-related \| chr4:15713866-15716035 FORWARD LENGTH=306	SoyBase	E_val: 4.00E-78	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR16441	Panther	FIDIPIDINE	JGI		ISS
PF09762	PFAM	Coiled-coil domain-containing protein (DUF2037)	JGI		ISS
UniRef100_B9RPC9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fidipidine, putative n=1 Tax=Ricinus communis RepID=B9RPC9_RICCO	SoyBase	E_val: 1.00E-95	ISS
UniRef100_I1K8Z5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K8Z5_SOYBN	SoyBase	E_val: 8.00E-174	ISS

Expression Patterns of Glyma06g07615

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g07615 not represented in the dataset	Glyma06g07615 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g07615

Paralog	Evidence	Comments
Glyma04g07501	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g07615 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g072500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g07615

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g07615

Limit To All Plant Sequences

>Glyma06g07615.2   sequence type=transcript   gene model=Glyma06g07615   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAATGATCTTTTTATGCCAAAAAAAAAAATCAAACGATAAGAGTAGTAATTTAGCCAAATTGTAAAAGAAAGAAAATCAGGATCCAAATTCCAAACCATATGTAAACAGTAAACCAAACTGGACTGAGGCGAGAAGGAGTAGAGCATAGTATGGAGCACACAGTCTCAAACTCAAGCAGTGTCGAGCAGATTCTGAATCTTCTCTACGCAGCCGGCTACGTCGACGCCACAAATCCCGATGCGCCGCCGTCTCAGAAAATCGCCGCCGGCCTCTCCTGGTGCATCGCCGCCATAACAGGCGACGACAACACACGTGACATCGAGGAATCGTTTGGATTAGTTGGATGCCCGCACCCTCTGCGATCCTCTCACATTCAGGATCTTGATACCGATGCTCTTTTTCCTGTAATTCAGTGGCTTGCGTCACACATTCGGCAAAATCAAGAACACTGTGTCAATGAGGTTCATCATGCTGAAAATACCATTGAAGTGGATGAGTGTAGAACTTCGATTCAGGCATTAAGTGGCAACTTGGATGAACTGAATCAGCGGAAGATGAATGTTGTGAAGCAATTATATATTCTACAAGAGAGAATCAATAAGGAGGGTGCTGATTCTGCAGTACAGAAGTTGCTTTCTTTACTGACATCTTTGAAGAATCTTGAAAAGCAGGAAAAATACTTTCAGTCCAATCGTGATGCTAAACACTCAGAACTTCAAGATGATATTAGTGAATTAGAGAGGAAAATAACAAATGACAGTGATAATGAGAACCTTCCTGATGAACTACATCATTCATTTGGTGAATTAGTTGAAAAAGTCAATTTGATGAAAAAGCAACTTGCTGCTAGACTGAGGGATATTGTGGTATTAAGACGACAGATTGATGACCTACCGTGCCAATCAGAAGTCATCCAGTACGAACGCCGGCTCTCAGAACTGTATGCACAAATCCAGGTTCATGAATTGTTTTGATGAAAAAGAGTTTATTATTAAGAAAAGAGGAAAAGTTAAGTTAGTGGGAGGCTAATACTTTTTTTTGTTTATCAAATCATACTCACTCTGGTTCTCACTTAACTTCTAATTGTTATGCATGTCTTTGGTTTTGCCTATGCACAGGGAAAACATCGACAAACTCGTAAATACTATGCTACCTACAATGCTCTCTTGGAAATAAAAGAATTGATGCTAAAGGAAACATCTTTATTGAATTCGATCATTTCCCAGTTTCAAGAGGCCTTTAGTAGCACTGATGGACGTATAAAACTTGTTCATTCCATGGAAGGAATTGTCAAGGGAAGTCAACAGGTAATGCTGTTTTCTAGCTTTCATAAATGATAAATTTGGATGAGTTAACTTCAGCTCGTCAGGTGTTGTGTTGATTTTAACTTAAGAATTCTAAGAACATTAAACAATCTGATTGCAGATAAATTGTTTGTCTGAACCTCACCCAACACATGTTTTTTTGTCCTATTTGAATTTTTTTGTCATTGCATTGTATTTAAAGAACACAAGGCACAAGAAGCTTTAAAAAATGTCGAGAAGCTTTTACAAGAAACTTGGGGGCTTACATTTTCCTAACACAGGAGGTATATA

>Glyma06g07615.3   sequence type=transcript   gene model=Glyma06g07615   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAATGATCTTTTTATGCCAAAAAAAAAAATCAAACGATAAGAGTAGTAATTTAGCCAAATTGTAAAAGAAAGAAAATCAGGATCCAAATTCCAAACCATATGTAAACAGTAAACCAAACTGGACTGAGGCGAGAAGGAGTAGAGCATAGTATGGAGCACACAGTCTCAAACTCAAGCAGTGTCGAGCAGATTCTGAATCTTCTCTACGCAGCCGGCTACGTCGACGCCACAAATCCCGATGCGCCGCCGTCTCAGAAAATCGCCGCCGGCCTCTCCTGGTGCATCGCCGCCATAACAGGCGACGACAACACACGTGACATCGAGGAATCGTTTGGATTAGTTGGATGCCCGCACCCTCTGCGATCCTCTCACATTCAGGATCTTGATACCGATGCTCTTTTTCCTGTAATTCAGTGGCTTGCGTCACACATTCGGCAAAATCAAGAACACTGTGTCAATGAGGTTCATCATGCTGAAAATACCATTGAAGTGGATGAGTGTAGAACTTCGATTCAGGCATTAAGTGGCAACTTGGATGAACTGAATCAGCGGAAGATGAATGTTGTGAAGCAATTATATATTCTACAAGAGAGAATCAATAAGGAGGGTGCTGATTCTGCAGTACAGAAGTTGCTTTCTTTACTGACATCTTTGAAGAATCTTGAAAAGCAGGAAAAATACTTTCAGTCCAATCGTGATGCTAAACACTCAGAACTTCAAGATGATATTAGTGAATTAGAGAGGAAAATAACAAATGACAGTGATAATGAGAACCTTCCTGATGAACTACATCATTCATTTGGTGAATTAGTTGAAAAAGTCAATTTGATGAAAAAGCAACTTGCTGCTAGACTGAGGGATATTGTGGTATTAAGACGACAGATTGATGACCTACCGTGCCAATCAGAAGTCATCCATTTCAAGAGGCCTTTAGTAGCACTGATGGACGTATAAAACTTGTTCATTCCATGGAAGGAATTGTCAAGGGAAGTCAACAGAAGCTAGAAAGGGTTCATGTAGGACTTCAAGAAGAAGAGAGAATTCGTAATGATCTGAAGGATAGGTATGCTGCAGCAACCGGTGAGCACAAGCACTGCTATTCTCTGTTGAAAGCTTTTCAGGCCCAATGTGCGAAGAATTAGAGGTTTCGATGACAAGACAACTTTGAGGTTGAGTTGCACAAAGTACTGTATCGCGTCAAAGCGTAGAGGTTGCGTTCATGCTCATAAAATCTGTATTTTAAAGCTGATGCCATGAGTTGTATGTAGTTATGATGATTCACATTCTTTCATTGCTATTTACAGTTTTATTTTACAGTAATATAAAACATTCTTTATGGTTCGAATTTTTGTACAGGTTTCTCTGTAACTGTAGACGATCCCAGTAAGGGTGGAGAATTCTCCAATTGAAATTTACTTTAACGTAAATTTACTAAGGATTGAATTTTTTTATAGCTGCAA

Coding sequences of Glyma06g07615

Limit To All Plant Sequences

>Glyma06g07615.1   sequence type=CDS   gene model=Glyma06g07615   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCACACAGTCTCAAACTCAAGCAGTGTCGAGCAGATTCTGAATCTTCTCTACGCAGCCGGCTACGTCGACGCCACAAATCCCGATGCGCCGCCGTCTCAGAAAATCGCCGCCGGCCTCTCCTGGTGCATCGCCGCCATAACAGGCGACGACAACACACGTGACATCGAGGAATCGTTTGGATTAGTTGGATGCCCGCACCCTCTGCGATCCTCTCACATTCAGGATCTTGATACCGATGCTCTTTTTCCTGTAATTCAGTGGCTTGCGTCACACATTCGGCAAAATCAAGAACACTGTGTCAATGAGGTTCATCATGCTGAAAATACCATTGAAGTGGATGAGTGTAGAACTTCGATTCAGGCATTAAGTGGCAACTTGGATGAACTGAATCAGCGGAAGATGAATGTTGTGAAGCAATTATATATTCTACAAGAGAGAATCAATAAGGAGGGTGCTGATTCTGCAGTACAGAAGTTGCTTTCTTTACTGACATCTTTGAAGAATCTTGAAAAGCAGGAAAAATACTTTCAGTCCAATCGTGATGCTAAACACTCAGAACTTCAAGATGATATTAGTGAATTAGAGAGGAAAATAACAAATGACAGTGATAATGAGAACCTTCCTGATGAACTACATCATTCATTTGGTGAATTAGTTGAAAAAGTCAATTTGATGAAAAAGCAACTTGCTGCTAGACTGAGGGATATTGTGGTATTAAGACGACAGATTGATGACCTACCGTGCCAATCAGAAGTCATCCAGTACGAACGCCGGCTCTCAGAACTGTATGCACAAATCCAGGGAAAACATCGACAAACTCGTAAATACTATGCTACCTACAATGCTCTCTTGGAAATAAAAGAATTGATGCTAAAGGAAACATCTTTATTGAATTCGATCATTTCCCAGTTTCAAGAGGCCTTTAGTAGCACTGATGGACGTATAAAACTTGTTCATTCCATGGAAGGAATTGTCAAGGGAAGTCAACAGAAGCTAGAAAGGGTTCATGTAGGACTTCAAGAAGAAGAGAGAATTCGTAATGATCTGAAGGATAGGTATGCTGCAGCAACCGGTGAGCACAAGCACTGCTATTCTCTGTTGAAAGCTTTTCAGGCCCAATGTGCGAAGAATTAG

>Glyma06g07615.2   sequence type=CDS   gene model=Glyma06g07615   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCACACAGTCTCAAACTCAAGCAGTGTCGAGCAGATTCTGAATCTTCTCTACGCAGCCGGCTACGTCGACGCCACAAATCCCGATGCGCCGCCGTCTCAGAAAATCGCCGCCGGCCTCTCCTGGTGCATCGCCGCCATAACAGGCGACGACAACACACGTGACATCGAGGAATCGTTTGGATTAGTTGGATGCCCGCACCCTCTGCGATCCTCTCACATTCAGGATCTTGATACCGATGCTCTTTTTCCTGTAATTCAGTGGCTTGCGTCACACATTCGGCAAAATCAAGAACACTGTGTCAATGAGGTTCATCATGCTGAAAATACCATTGAAGTGGATGAGTGTAGAACTTCGATTCAGGCATTAAGTGGCAACTTGGATGAACTGAATCAGCGGAAGATGAATGTTGTGAAGCAATTATATATTCTACAAGAGAGAATCAATAAGGAGGGTGCTGATTCTGCAGTACAGAAGTTGCTTTCTTTACTGACATCTTTGAAGAATCTTGAAAAGCAGGAAAAATACTTTCAGTCCAATCGTGATGCTAAACACTCAGAACTTCAAGATGATATTAGTGAATTAGAGAGGAAAATAACAAATGACAGTGATAATGAGAACCTTCCTGATGAACTACATCATTCATTTGGTGAATTAGTTGAAAAAGTCAATTTGATGAAAAAGCAACTTGCTGCTAGACTGAGGGATATTGTGGTATTAAGACGACAGATTGATGACCTACCGTGCCAATCAGAAGTCATCCAGTACGAACGCCGGCTCTCAGAACTGTATGCACAAATCCAGGTTCATGAATTGTTTTGA

>Glyma06g07615.3   sequence type=CDS   gene model=Glyma06g07615   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCACACAGTCTCAAACTCAAGCAGTGTCGAGCAGATTCTGAATCTTCTCTACGCAGCCGGCTACGTCGACGCCACAAATCCCGATGCGCCGCCGTCTCAGAAAATCGCCGCCGGCCTCTCCTGGTGCATCGCCGCCATAACAGGCGACGACAACACACGTGACATCGAGGAATCGTTTGGATTAGTTGGATGCCCGCACCCTCTGCGATCCTCTCACATTCAGGATCTTGATACCGATGCTCTTTTTCCTGTAATTCAGTGGCTTGCGTCACACATTCGGCAAAATCAAGAACACTGTGTCAATGAGGTTCATCATGCTGAAAATACCATTGAAGTGGATGAGTGTAGAACTTCGATTCAGGCATTAAGTGGCAACTTGGATGAACTGAATCAGCGGAAGATGAATGTTGTGAAGCAATTATATATTCTACAAGAGAGAATCAATAAGGAGGGTGCTGATTCTGCAGTACAGAAGTTGCTTTCTTTACTGACATCTTTGAAGAATCTTGAAAAGCAGGAAAAATACTTTCAGTCCAATCGTGATGCTAAACACTCAGAACTTCAAGATGATATTAGTGAATTAGAGAGGAAAATAACAAATGACAGTGATAATGAGAACCTTCCTGATGAACTACATCATTCATTTGGTGAATTAGTTGAAAAAGTCAATTTGATGAAAAAGCAACTTGCTGCTAGACTGAGGGATATTGTGGTATTAAGACGACAGATTGATGACCTACCGTGCCAATCAGAAGTCATCCATTTCAAGAGGCCTTTAGTAGCACTGATGGACGTATAA

Predicted protein sequences of Glyma06g07615

Limit To All Plant Sequences

>Glyma06g07615.1   sequence type=predicted peptide   gene model=Glyma06g07615   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHTVSNSSSVEQILNLLYAAGYVDATNPDAPPSQKIAAGLSWCIAAITGDDNTRDIEESFGLVGCPHPLRSSHIQDLDTDALFPVIQWLASHIRQNQEHCVNEVHHAENTIEVDECRTSIQALSGNLDELNQRKMNVVKQLYILQERINKEGADSAVQKLLSLLTSLKNLEKQEKYFQSNRDAKHSELQDDISELERKITNDSDNENLPDELHHSFGELVEKVNLMKKQLAARLRDIVVLRRQIDDLPCQSEVIQYERRLSELYAQIQGKHRQTRKYYATYNALLEIKELMLKETSLLNSIISQFQEAFSSTDGRIKLVHSMEGIVKGSQQKLERVHVGLQEEERIRNDLKDRYAAATGEHKHCYSLLKAFQAQCAKN*

>Glyma06g07615.2   sequence type=predicted peptide   gene model=Glyma06g07615   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHTVSNSSSVEQILNLLYAAGYVDATNPDAPPSQKIAAGLSWCIAAITGDDNTRDIEESFGLVGCPHPLRSSHIQDLDTDALFPVIQWLASHIRQNQEHCVNEVHHAENTIEVDECRTSIQALSGNLDELNQRKMNVVKQLYILQERINKEGADSAVQKLLSLLTSLKNLEKQEKYFQSNRDAKHSELQDDISELERKITNDSDNENLPDELHHSFGELVEKVNLMKKQLAARLRDIVVLRRQIDDLPCQSEVIQYERRLSELYAQIQVHELF*

>Glyma06g07615.3   sequence type=predicted peptide   gene model=Glyma06g07615   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHTVSNSSSVEQILNLLYAAGYVDATNPDAPPSQKIAAGLSWCIAAITGDDNTRDIEESFGLVGCPHPLRSSHIQDLDTDALFPVIQWLASHIRQNQEHCVNEVHHAENTIEVDECRTSIQALSGNLDELNQRKMNVVKQLYILQERINKEGADSAVQKLLSLLTSLKNLEKQEKYFQSNRDAKHSELQDDISELERKITNDSDNENLPDELHHSFGELVEKVNLMKKQLAARLRDIVVLRRQIDDLPCQSEVIHFKRPLVALMDV*

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