SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g07580

Feature Type:gene_model
Chromosome:Gm06
Start:5528012
stop:5541324
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g07580
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32551AT Annotation by Michelle Graham. TAIR10: LisH dimerisation motif;WD40/YVTN repeat-like-containing domain | chr4:15707863-15713359 FORWARD LENGTH=931 SoyBaseE_val: 0ISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0007155GO-bp Annotation by Michelle Graham. GO Biological Process: cell adhesion SoyBaseN/AISS
GO:0007267GO-bp Annotation by Michelle Graham. GO Biological Process: cell-cell signaling SoyBaseN/AISS
GO:0009616GO-bp Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0009886GO-bp Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis SoyBaseN/AISS
GO:0009887GO-bp Annotation by Michelle Graham. GO Biological Process: organ morphogenesis SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0010051GO-bp Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0016246GO-bp Annotation by Michelle Graham. GO Biological Process: RNA interference SoyBaseN/AISS
GO:0016569GO-bp Annotation by Michelle Graham. GO Biological Process: covalent chromatin modification SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0045010GO-bp Annotation by Michelle Graham. GO Biological Process: actin nucleation SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048439GO-bp Annotation by Michelle Graham. GO Biological Process: flower morphogenesis SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0048507GO-bp Annotation by Michelle Graham. GO Biological Process: meristem development SoyBaseN/AISS
GO:0048519GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0080001GO-bp Annotation by Michelle Graham. GO Biological Process: mucilage extrusion from seed coat SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0046982GO-mf Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity SoyBaseN/AISS
KOG0266 KOG WD40 repeat-containing protein JGI ISS
PTHR22847Panther WD40 REPEAT PROTEIN JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
PF08513PFAM LisH JGI ISS
UniRef100_G7JBP5UniRef Annotation by Michelle Graham. Most informative UniRef hit: NAD(P)H-quinone oxidoreductase subunit n=1 Tax=Medicago truncatula RepID=G7JBP5_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233A450UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A450 related cluster n=1 Tax=unknown RepID=UPI000233A450 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g07580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g07580
ParalogEvidenceComments
Glyma04g07460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g07580 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g072200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g07580
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g07580
>Glyma06g07580.1   sequence type=CDS   gene model=Glyma06g07580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTCCTAAAATCTAGAGGCGTTCTGTTCTTTGTTGGATTTTCTTCTTCTTCGCTACTCTTCTCTCTCTTTCTTTCTCTATCTATTCTATTCTATATTCTCTTTTCTTTTCCATTCTTGTCCTTTGCTTCTGACGCAACTCTACCAACTAAATTCAACTCTTTCGCTACTTCCTTCTGCGTTTCACAGCTCCCAACTCATTCTTTAGGCGCCCCTCGACATACTCGCTCACCTTTCTTCGCTTCCACAACCATGTCTCAGACCAACTGGGAAGCTGACAAGATGTTAGATGTTTACATCCATGATTATCTTGTTAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCATCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATATTTATTGCAAGGACAAATGAAAAGCACTCAGAGGTTGCTGCATCGTATATTGAGACACAATTAATAAAGGCAAGGGAGCAACAACAGCAGCAGAACCAGCAGCAGCCACAGCCCCAGCAATCACAGCATCAGCAACAACACATGCAGATGCAACAGCTCCTGTTGCAGAGAGCACAGCAACAACAGCAGCAGCAGCAGCAACAACAACAGCAGCCACAATCGCAGCAACAGCAGTCACAACCACAACAACAACAGCAAAGTAGGGATAGGCCTCATCTTTTAAATGGTAGTGCAAATGGGTTAGTCGGAAACCCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGATTAAAACTTCCCCTTCAAAGGGACTCTTTGGATGATGCAGCAACGAAGCAAAGATTTGGTGAGAACATGGGCCAGCTCTTGGACCCAAATCATGCACCGATATTAAAGTCAGCTGCAGCTCCTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCCACAAGTTCAAGCACGTACTCAACAATTACCAGGGTCTACTCTGGATATAAAGGGTGAGATTAGTCCTGTTTTAAATCCCAGAGCTGTGGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCCAGGTAGCAATAATTTGACTTTGAAAGGGTGGCCTCTCACAGGTTTGGAGCAACTGCGCTCTGGTCTACTCCAGCAACAAAAACCTTTCATGCAGGCTCCTCAGCCTTTTCATCAACTCCAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTGGCACAACAAAATCTGGCATCACCATCTGCCAGTGAAGAAAGTAGAAGACTGCGAATGCTATTAAATAATAGGAATATTGGTCTAAATAAGGATGGTCTTTCAAATCCTGTTGGTGATGTGGTATCAAATGTTGGATCCCCACTTCAAGGTGGTGGTCCTCCTTTTCCTCGTGGAGATACAGATATGCTAGTGAAGTTGAAGCTGGCTCAGTTACAGCAGCAGCAACAACAACAGTCAAGTACCAATGCACAGCAGCAGCAGCTTCAACAGCACACCCTTTCAAACCAGCAATCTCAGACTTCTAATCATAGCATGCACCAGCAAGATAAAGTAGGTGGAGGTGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAACCAGATTGGGAGAAAGAGAAAACAGCCTGGCTCCTCGTCAGGTCCTGCCAATAGTTCAGGAACAGCAAATACTACAGGTCCATCACCAAGTTCAGCACCCTCAACTCCTTCAACTCATACGCCTGGAGATGTGATATCAATGCCTGCCTTGCCTCATAGTGGTAGTTCTTCGAAGCCTTTAATGATGTTTAGCACAGATGGCACTGGAACCCTTACGTCACCATCTAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTTGAGTCTTTTTTGTCCCATGATGACACGGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGGGCAAGCACAAGCAAAGTTTCCTGTTGCCATTTCTCATCTGATGGGAAATTACTAGCAAGTGGTGGCCATGACAAAAAGGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCTAGCATGCCTCGTCTTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCACTTCGCACCTTCACGGGACATTCAACATCTGTTATGTCACTAGATTTTCATCCAAATAAAGATGACCTCATCTGCTCTTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAATGGAAGTTGTGCTAGAGTCTCCAAGGGTGGCACCACACAGATGAGATTTCAGCCTCGTCTCGGGAGGTACCTTGCTGCAGCGGCAGAGAATATTGTGTCTATTTTTGATGTGGAGACACAAGTGTGTCGATATTCACTAAAGGGACACACAAAACCGGTGGTTTGTGTGTGTTGGGACCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGATGGGGAATGTGTTCATGAACTTAGCTGTAACGGAAATAAGTTTCATAAATCTGTTTTCCACCCAACGTACCCTTCATTGCTGGTCATTGGCTGTTACCAGTCATTGGAGTTGTGGAACATGAGCGAGAACAAGACGATGACTCTGTCTGCTCATGATGGTCTCATTACTTCCTTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCAGCTAGTCATGACAAGTTCCTCAAGCTCTGGAAGTGA
Predicted protein sequences of Glyma06g07580
>Glyma06g07580.1   sequence type=predicted peptide   gene model=Glyma06g07580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFLKSRGVLFFVGFSSSSLLFSLFLSLSILFYILFSFPFLSFASDATLPTKFNSFATSFCVSQLPTHSLGAPRHTRSPFFASTTMSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQHMQMQQLLLQRAQQQQQQQQQQQQQPQSQQQQSQPQQQQQSRDRPHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSLDDAATKQRFGENMGQLLDPNHAPILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAVGPEGSLMGMPGSNPGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLVKLKLAQLQQQQQQQSSTNAQQQQLQQHTLSNQQSQTSNHSMHQQDKVGGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVSCCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQVCRYSLKGHTKPVVCVCWDPSGELLASVSEDSVRVWTLGSGSDGECVHELSCNGNKFHKSVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAVSTVNGLVASASHDKFLKLWK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo