Glyma06g07500 - SoyBase

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Report for Sequence Feature Glyma06g07500

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5454956
stop:	5457182
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g07500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G18660	AT	Annotation by Michelle Graham. TAIR10: plant natriuretic peptide A \| chr2:8091032-8091644 REVERSE LENGTH=130	SoyBase	E_val: 3.00E-13	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0010230	GO-bp	Annotation by Michelle Graham. GO Biological Process: alternative respiration	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
PF03330	PFAM	Rare lipoprotein A (RlpA)-like double-psi beta-barrel	JGI		ISS
UniRef100_G7JBM8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EG45-like domain containing protein n=3 Tax=Medicago truncatula RepID=G7JBM8_MEDTR	SoyBase	E_val: 6.00E-67	ISS
UniRef100_I1K8Y4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8Y4_SOYBN	SoyBase	E_val: 2.00E-97	ISS

Expression Patterns of Glyma06g07500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g07500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g071400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g07500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g07500

Limit To All Plant Sequences

>Glyma06g07500.2   sequence type=transcript   gene model=Glyma06g07500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTATTCGTACCGTTCGGATACATCCGATAACTCCATTTTTCATTCCCTTAGGAAGGAGGTTAATAATTTTAACAGCAATAATGTCCAAGGTTCGTCTTTTGAATTTCTCCCATGGCCTAATCCTCTCAACACTCTTCATCCACTACTCTCTAGCTGATGTTGGCACTGCTGCCCAATATGGCCCTCCCTTTTTGCCGACCACATGTTTCGGCAGAGACGCATCGCAGTTTCCGTCAAGTAACATGTTTGCTGCGGCCGGGGAGGGTATATGGGACAATGGTGCCGCGTGTGGGAGGCAGTATCAGGTGCGCTGCATCAGCGCTGCGGCACCCAGGACTTGTGTTCCTGGCCAGACGATTCAGATCAAGATTGTTGATCGAGCGCAATCATCGGTTTCTAGGCCTTCCCTAGGTGGAACTTCCATGGTCCTCTCCGTCACTGCCTTCCAGGCCATCGCCAATGTTTCTGCGTCATTCATTAACATTGAATTCCAGCAGGTTTGAAAACGGGAAGTAGCTCTTGGATGCATCATGCAAAAGCAAAGGGAATAAGGAGCCGGGCAAATTTGTTACTCTAGAAAAGTGTCTGTGAAGATTGTTACAGTCAATATGTACATGAACTTGCATTTTTATTTTAATAACTAGTTTAATATCCATGTGGACCCACAAGTAAGTAAGGTTAAACATTTTTATGTTTATTTTAATAATGGTCTGTATCGGTTAAAATATGCGTTCTTTACGTTCTTAATGATTAAATATCGA

Coding sequences of Glyma06g07500

Limit To All Plant Sequences

>Glyma06g07500.1   sequence type=CDS   gene model=Glyma06g07500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAAGGTTCGTCTTTTGAATTTCTCCCATGGCCTAATCCTCTCAACACTCTTCATCCACTACTCTCTAGCTGATGTTGGCACTGCTGCCCAATATGGCCCTCCCTTTTTGCCGACCACATGTTTCGGCAGAGACGCATCGCAGTTTCCGTCAAGTAACATGTTTGCTGCGGCCGGGGAGGGTATATGGGACAATGGTGCCGCGTGTGGGAGGCAGTATCAGGTGCGCTGCATCAGCGCTGCGGCACCCAGGACTTGTGTTCCTGGCCAGACGATTCAGATCAAGATTGTTGATCGAGCGCAATCATCGGTTTCTAGGCCTTCCCTAGGTGGAACTTCCATGGTCCTCTCCGTCACTGCCTTCCAGGCCATCGCCAATGTTTCTGCGTCATTCATTAACATTGAATTCCAGCAGGTTTGA

>Glyma06g07500.2   sequence type=CDS   gene model=Glyma06g07500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAAGGTTCGTCTTTTGAATTTCTCCCATGGCCTAATCCTCTCAACACTCTTCATCCACTACTCTCTAGCTGATGTTGGCACTGCTGCCCAATATGGCCCTCCCTTTTTGCCGACCACATGTTTCGGCAGAGACGCATCGCAGTTTCCGTCAAGTAACATGTTTGCTGCGGCCGGGGAGGGTATATGGGACAATGGTGCCGCGTGTGGGAGGCAGTATCAGGTGCGCTGCATCAGCGCTGCGGCACCCAGGACTTGTGTTCCTGGCCAGACGATTCAGATCAAGATTGTTGATCGAGCGCAATCATCGGTTTCTAGGCCTTCCCTAGGTGGAACTTCCATGGTCCTCTCCGTCACTGCCTTCCAGGCCATCGCCAATGTTTCTGCGTCATTCATTAACATTGAATTCCAGCAGGTTTGA

Predicted protein sequences of Glyma06g07500

Limit To All Plant Sequences

>Glyma06g07500.1   sequence type=predicted peptide   gene model=Glyma06g07500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKVRLLNFSHGLILSTLFIHYSLADVGTAAQYGPPFLPTTCFGRDASQFPSSNMFAAAGEGIWDNGAACGRQYQVRCISAAAPRTCVPGQTIQIKIVDRAQSSVSRPSLGGTSMVLSVTAFQAIANVSASFINIEFQQV*

>Glyma06g07500.2   sequence type=predicted peptide   gene model=Glyma06g07500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKVRLLNFSHGLILSTLFIHYSLADVGTAAQYGPPFLPTTCFGRDASQFPSSNMFAAAGEGIWDNGAACGRQYQVRCISAAAPRTCVPGQTIQIKIVDRAQSSVSRPSLGGTSMVLSVTAFQAIANVSASFINIEFQQV*

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