Report for Sequence Feature Glyma06g07480
Feature Type: gene_model
Chromosome: Gm06
Start: 5437073
stop: 5442126
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g07480
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G15460 AT
Annotation by Michelle Graham. TAIR10: HCO3- transporter family | chr1:5310196-5313376 REVERSE LENGTH=683
SoyBase E_val: 0 ISS
GO:0006820 GO-bp
Annotation by Michelle Graham. GO Biological Process: anion transport
SoyBase N/A ISS
GO:0046713 GO-bp
Annotation by Michelle Graham. GO Biological Process: borate transport
SoyBase N/A ISS
GO:0080029 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to boron-containing substance levels
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0005452 GO-mf
Annotation by Michelle Graham. GO Molecular Function: inorganic anion exchanger activity
SoyBase N/A ISS
GO:0015301 GO-mf
Annotation by Michelle Graham. GO Molecular Function: anion:anion antiporter activity
SoyBase N/A ISS
GO:0080139 GO-mf
Annotation by Michelle Graham. GO Molecular Function: borate efflux transmembrane transporter activity
SoyBase N/A ISS
PTHR11453 Panther
ANION EXCHANGE PROTEIN
JGI ISS
PTHR11453:SF6 Panther
ANION EXCHANGE PROTEIN-RELATED
JGI ISS
PF00955 PFAM
HCO3- transporter family
JGI ISS
UniRef100_G7JBM4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Anion exchanger family protein n=1 Tax=Medicago truncatula RepID=G7JBM4_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233A007 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233A007 related cluster n=1 Tax=unknown RepID=UPI000233A007
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g07480
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g07480
Paralog Evidence Comments
Glyma04g07390 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g07480 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g071200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g07480
Coding sequences of Glyma06g07480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g07480.1 sequence type=CDS gene model=Glyma06g07480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAGCACCATTTAAGGGAATAATTCAAGATGTCAAGGGAAGAGCTCAATTCTATAAACAAGACTGGATTTGTGCAATCTGTTCTGGCGTTAGCATATTGGCTCCAACTTTCTACATATTCTTTGCTTCTGCTCTTCCTGTCATCGCCTTCGGAGAGCAACTTAATAGGAATACAGATGGAACCTTGAGCACAGTGGAAACATTGGCATCTACTGCTATATGTGGAGTTGTTCACTCAATATTAGGTGGCCAACCTTTGTTGATTTTAGGAGTTGCTGAACCCACTGTCATAATGTACACTTACCTGTACAGTTTTTGCCAAAAGACACCTGAACTAGGTGGCAAGCTCTTTCTGCCTTGGGCTGGCTGGGTTTGTGTTTGGACGGGAATCTTTTTGATTCTGCTTGCAATTTTCAATGCTTGCACAATTATCACAAGGTTTACAAGAATTGCAGGGGAGTTATTTGGCATGCTCATAACTGTTCTCTTCTTTCAAGAGGCTATAAAGGGATTGATAGGCGAGTTCAACACGCCAAAGAATGAAAATCCTTCCTTAGTGGAATTTCAATTCCAGTGGCTGTATACAAATGGATTACTCGCAATCATTTTCTGTTTTGGACTACTTGTCACTGCCCTTAAAAGCAGAAGAGCAAGAACGTGGCGATATGGAACAGGGTGGCTACGAGGATTTATTGCAGATTATGGGGTTCCAATGATGGTAGTGTTATGGACTGCACTATCTTATGCTGTACCAGGCAAAGTTCCAGATGGTGTTCCTAGAAGGCTCATTGCTCCCCTTCCCTGGGATGCTGCATCTCTCTATCACTGGACAGTAGTGAAGGATATGGGGAAGGTACCCGTGGTTTATATATTTGGGGCAATTATTCCAGCTCTGATGATAGCAGGCTTATACTTTTTCGATCACAGCGTAGCTTCGCAGATGGCGCAACAGAAAGAATTTAACCTTCAAAAACCATCTGCCTACCACTATGATGTTTTGCTGCTTGGAATAATGACTCTGATTTGCGGGATCCTTGGCCTTCCTCCTTCCAATGGAGTCCTTCCACAGTCCCCCATGCATACAAAGAGTTTAGCAGTCCTTAGGAGGCGGTTGATCCGAAAGAAGGTGGTGAAGAGCGCCAAGGAATGCATTAAGCAACGAAGGACCAACTCTGAATTATATGGAAAGATGGAAGAGGTGATTGTAGAAATGGATACAGACCCTACGGTTAAAGAATTGGAGAATTTGAAGGAAGCTGTAATGCAATCTGATAGCAAGGATGGTGCAAGGGAAAAGTTTGATCCTGAGAAACACATAGATGAATATTTGCCAGTGCGTGTTAATGAGCAAAGAATGACCAACTTATTGCAGTCCCTCCTGGTTGGCGTATCAATCTTAGCCATGTCAGTTATCAAAAGGATACCAACCTCGGTTCTTTGGGGATATTTCGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTCGTCACCCCAAGCCGGCGTTACAAAATTTTGGAAGGTTCACATGCCTCTTTTGTGGAGACAGTACCATTCAAGACCATAGCTGCATTTACAGCCTTACAGTTAGCGTATTTTGCGTTATGTTTCGGGGTGACTTGGATACCTATAGGTGGAATATTGTTCCCCGTACCATTCTTCCTTCTCATAATTATAAGAGAACAGTTGCTTCCAAAGATGTTCAAGCCTAGCCATCTTCAAGAACTAGATGCTTCTGGGTATGAGGAAATTGCTGGTGCTCCTCATGGTTCACTGAGGGATAAGGAGCCAGATACTGATACTGATGGAAGCTCAGAAGACTTTTACGATGCAGAGATATTGGATGAGATGACAACCAACAGGGGAGAGTTAAAACTTAGAACTGTAAGCAGCTTCAGTGAAGACAGACAAACTCAGGTTTATCCAGGAAATGCTGTCTGA
Predicted protein sequences of Glyma06g07480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g07480.1 sequence type=predicted peptide gene model=Glyma06g07480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGAPFKGIIQDVKGRAQFYKQDWICAICSGVSILAPTFYIFFASALPVIAFGEQLNRNTDGTLSTVETLASTAICGVVHSILGGQPLLILGVAEPTVIMYTYLYSFCQKTPELGGKLFLPWAGWVCVWTGIFLILLAIFNACTIITRFTRIAGELFGMLITVLFFQEAIKGLIGEFNTPKNENPSLVEFQFQWLYTNGLLAIIFCFGLLVTALKSRRARTWRYGTGWLRGFIADYGVPMMVVLWTALSYAVPGKVPDGVPRRLIAPLPWDAASLYHWTVVKDMGKVPVVYIFGAIIPALMIAGLYFFDHSVASQMAQQKEFNLQKPSAYHYDVLLLGIMTLICGILGLPPSNGVLPQSPMHTKSLAVLRRRLIRKKVVKSAKECIKQRRTNSELYGKMEEVIVEMDTDPTVKELENLKEAVMQSDSKDGAREKFDPEKHIDEYLPVRVNEQRMTNLLQSLLVGVSILAMSVIKRIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVTPSRRYKILEGSHASFVETVPFKTIAAFTALQLAYFALCFGVTWIPIGGILFPVPFFLLIIIREQLLPKMFKPSHLQELDASGYEEIAGAPHGSLRDKEPDTDTDGSSEDFYDAEILDEMTTNRGELKLRTVSSFSEDRQTQVYPGNAV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
