SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26650 | AT | Annotation by Michelle Graham. TAIR10: K+ transporter 1 | chr2:11331965-11336444 REVERSE LENGTH=857 | SoyBase | E_val: 0 | ISS |
| GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
| GO:0006813 | GO-bp | Annotation by Michelle Graham. GO Biological Process: potassium ion transport | SoyBase | N/A | ISS |
| GO:0006826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transport | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation | SoyBase | N/A | ISS |
| GO:0010107 | GO-bp | Annotation by Michelle Graham. GO Biological Process: potassium ion import | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0045595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation | SoyBase | N/A | ISS |
| GO:0048589 | GO-bp | Annotation by Michelle Graham. GO Biological Process: developmental growth | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0090333 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of stomatal closure | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005242 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inward rectifier potassium channel activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0030551 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding | SoyBase | N/A | ISS |
| GO:0042802 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: identical protein binding | SoyBase | N/A | ISS |
| KOG0498 | KOG | K+-channel ERG and related proteins, contain PAS/PAC sensor domain | JGI | ISS | |
| PTHR10217 | Panther | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL | JGI | ISS | |
| PTHR10217:SF6 | Panther | EAG-RELATED VOLTAGE-GATED POTASSIUM CHANNEL | JGI | ISS | |
| PF00023 | PFAM | Ankyrin repeat | JGI | ISS | |
| PF00027 | PFAM | Cyclic nucleotide-binding domain | JGI | ISS | |
| PF00520 | PFAM | Ion transport protein | JGI | ISS | |
| PF11834 | PFAM | Domain of unknown function (DUF3354) | JGI | ISS | |
| UniRef100_B9STQ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Potassium channel AKT1, putative n=1 Tax=Ricinus communis RepID=B9STQ4_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A44B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A44B related cluster n=1 Tax=unknown RepID=UPI000233A44B | SoyBase | E_val: 0 | ISS |
|
Glyma06g07470 not represented in the dataset |
Glyma06g07470 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g07380 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g071100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g07470.1 sequence type=CDS gene model=Glyma06g07470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCACGCGTGCCAAGAACGTGTTTGCAAGGTTCTGTTTTTGCCATGATGAGGCTGCGGATGATGAGAGGCATAGAAAGCACGTAGAGTTTGATCAAATGACGAATGAAGGAAGCCAATACAGCCTCAACGGAGTTCCGCTTCCGTCTCTCGGCGCCACCGCCGCTGGCCGCTCCCAGAGATACAAGCTCCGGAGTTACATTGTCTCCCCGTACAATCCTCGTTACAGATTGTGGAACACGTTTCTGGTGTTGTTAGTTTTCTACACTGCATGGGTTTGCCCCTTTGAGTTTGGATTCCTTAACGATCCGTCGGATCCTCTTTCCATTGCTGACAATGTGGTGAACTTTTTTTTTGCCATTGACATTGTTCTGACCTTCTTTGTTGCCTACCTCAACAAGTCTACGTATCTGCTCGTGGATGAACCAAAGCTCATTGCCTCCAGATATCTTAGAACATGGTTTGCCTTTGATGTCCTCGCCACCGTCCCTTCTGAATTTGCCCGCCACGTCTTGCCGCCTCCTTTTAAGCAATATGGCATGTTCAACATTCTCCGTCTATGGCGTCTCCGTAGAGTTAGTGCCATGTTTGCAAGATTAGAAAAGGACAGAAATTATAACTACTTCTGGGTGCGCTGTTCAAAGCTTATATGTGTTACGCTATTTTCAGTGCATTTTGCTGCCTGCATTTTCTATTTTCTTGCTTTAGATCGTGACCCAAGTTCAACATGGCTTAGCCTGGTTTCTGATGACGCTCAAAGCAGTGTTTGGAAGCGCTATGTAACATCAATGTACTGGTCCATAGTGACTCTTTCAACAGTCGGTTATGGTGACCTGCATCCAGTAAGTACCAAGGAGATGGTGTTTGACGTATTTTATATGCTCTTTAACCTCGGACTAACGGCATATCTTATCGGAAACATGACAAACTTGGTTGTTCATGGGACAAGCAGAACTAGGAAATATAGAGACACGGTGCAAGGTGCGACAAGTTTTGCCCGTCGGAATCAGTTACCTATCCGCTTGGAAGAACAGATGCTTGCTCATTTGTTTATGAAGTACAGAACTGATTTAGAAGGATTGCAGCAACAAGAAATTATTGAAACCCTTCCAAAGGCTATTAGATCTAGCATCGCACACTACCTATTCTATCCACTTGTGGACAAAGTGTACTTGTTTCATGGAGTGTCGAGTGACCTACTCTTTCAACTGGTCACGGAGATGAGGGCTGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAGAATGAAGCGCCAACAGACTTTTATATCTTTGTTACTGGTGCTGCAGAACTCATCATTAGAAACAATGGAATGGAGCAGGTCGTTGGTGAGGCAGGGTCAGGAGATATAGTTGGAGAAATAGGAGTTCTATGTTACAGGCCACAGATGTTTACAATTCGAACCAAACGATTGAGCCAAATTCTGCGCTTGAACCGTACTACATTTATAAATCTTGTTCATTCAAATATTGGAGATGGGGCAATAGTTATGAACAATTTTCTCCAGCATTTGCAAGAATCAAGGTATCCGGGGATGGATGTTATTTTGGCAGAAACGGAGGCCATGCTTGCTCGGGGCAAAATGGACATGCCCATTACCACATGCTTTGCAGTAACCAGAAATGATGATCTATTGTTGCATCGTTTGCTTAAGAGGGGTTCAGATCCAAATGAATTAGATAGGAGTGGAAAGACAGCACTGCATATTGCAGCTTCCAAAGGCAATGAGCATTGTGTAAATTTGCTTCTAGAATATGGTGCTGATCCAAATAGCAAAGATATGGATGGAAGTGTCCCACTATGGGAAGCAATGAAGGGTAGGCATGAATCCGTGATGAAAATTCTCATAGACAATGGTGCAGACATATCTTTTGCCGATGCAGGCCATCTAGCATGCAGTGCTGTTGAGCAAAATAACATGGAATTGCTCAAGGAAATTATTCAATGTGGCATGGATGTGACACAACCTAAAAAAAATGGAGCCACAGCTCTTCATACTGCAGTAGTTGAAGGAAACACTGAGATGATTAACTTCCTTGTAGACCAAGGAGCAGACATTGACATGCAAGATGTTAATGGGTGGACACCAAGGGTTTTGGCAGAACAAAGTGAAAGCGAAGAAATTAAAAATATATTCCATGACATTAAAGATAGCAGAAAACCAGGTGTTATTCCAATTTCAAAGAATGACAACAGGAGTGGGAGGTTTCAAATTGATCCAAGCATGCTTACCATACCCCAAGAAAGCATGCTACTGCCACCTTATGATGGGAGGAGAAGGTCTTCCAGCTCTTTTGATAATTCCATTTTTGGAATGATGTCAACTGCCAATCGTGCTAAGAGAGATCTCCAGGCATCTGAAAGCAGTAGCACTAGAAGGAGTGTGAATGGATTAGCCAGAGTGACACTTAGTTGTCCTGAAAAGGGTGAACATGCTGGAAAGCTTGTTTTGCTGCCCAAGACCCTTGAAGAGCTGCTAGATATTGGTGCCAGAAAGTTTGATATATCTGCCACCAAAATTTTGACCACAAATGGAGCTGAAGTAGAGGATATAAATCTTGTAAGAGATGGTGATCATCTTATTATTGGCGGTATTGAAGAGGGAAACAAGAATTGA
>Glyma06g07470.1 sequence type=predicted peptide gene model=Glyma06g07470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSTRAKNVFARFCFCHDEAADDERHRKHVEFDQMTNEGSQYSLNGVPLPSLGATAAGRSQRYKLRSYIVSPYNPRYRLWNTFLVLLVFYTAWVCPFEFGFLNDPSDPLSIADNVVNFFFAIDIVLTFFVAYLNKSTYLLVDEPKLIASRYLRTWFAFDVLATVPSEFARHVLPPPFKQYGMFNILRLWRLRRVSAMFARLEKDRNYNYFWVRCSKLICVTLFSVHFAACIFYFLALDRDPSSTWLSLVSDDAQSSVWKRYVTSMYWSIVTLSTVGYGDLHPVSTKEMVFDVFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKYRDTVQGATSFARRNQLPIRLEEQMLAHLFMKYRTDLEGLQQQEIIETLPKAIRSSIAHYLFYPLVDKVYLFHGVSSDLLFQLVTEMRAEYFPPKEDVILQNEAPTDFYIFVTGAAELIIRNNGMEQVVGEAGSGDIVGEIGVLCYRPQMFTIRTKRLSQILRLNRTTFINLVHSNIGDGAIVMNNFLQHLQESRYPGMDVILAETEAMLARGKMDMPITTCFAVTRNDDLLLHRLLKRGSDPNELDRSGKTALHIAASKGNEHCVNLLLEYGADPNSKDMDGSVPLWEAMKGRHESVMKILIDNGADISFADAGHLACSAVEQNNMELLKEIIQCGMDVTQPKKNGATALHTAVVEGNTEMINFLVDQGADIDMQDVNGWTPRVLAEQSESEEIKNIFHDIKDSRKPGVIPISKNDNRSGRFQIDPSMLTIPQESMLLPPYDGRRRSSSSFDNSIFGMMSTANRAKRDLQASESSSTRRSVNGLARVTLSCPEKGEHAGKLVLLPKTLEELLDIGARKFDISATKILTTNGAEVEDINLVRDGDHLIIGGIEEGNKN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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