Glyma06g07460 - SoyBase

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Report for Sequence Feature Glyma06g07460

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5418119
stop:	5421300
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g07460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11420	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF642 \| chr5:3644655-3646991 FORWARD LENGTH=366	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04862	PFAM	Protein of unknown function, DUF642	JGI		ISS
UniRef100_I1K8Y0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8Y0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q43557	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Unidentified n=1 Tax=Medicago sativa RepID=Q43557_MEDSA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g07460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g07460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g071000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g07460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g07460

Limit To All Plant Sequences

>Glyma06g07460.2   sequence type=transcript   gene model=Glyma06g07460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATAAGGTCATCATCTCCTTCCTCTGCTGCAAGCTATTCTCTTCTTAAGTTGATCAGTTTCACAGCCCAGCTAGCTAACATGGAAAGGTTCTCATTTCTATTGGTGCTCTTTTGTTGCTTCCATGTTGCCTTCTCCTTTACTCATGGAGCAGTGATCAATGGAGAGTTTGAGCTTGGACCAAAGCCACAGGACATGAAAGGCACGGTGGTGACCGGGGGTCCCCACTCTATACCCGGGTGGGAGATCTCTGGCTTCATTGAGTACATAAAATCAGGGCAGAAACAAGATGACATGTTGCTTGTGGTGCCAAATGGAGCTTATGCGGTGAGGCTTGGCAACGAGGCCTCTATTAAGCAAAATCTAAAAGTGGTAAAAGGAATGTACTATTCTATCACGTTTGTAGTGGCACGCACGTGTGCACAAGAGGAAAAGCTAAACGTTTCTGCCGCTCCAGATTGGGTGGTGCTCCCAATGCAAACGGTGTATGGTGGAAATGGTTGGGATGCTTATGCATGGTCTTTCCGAGCAGATTACCCTTCAGTAGACATGGTTTTTCATAACCCGGGAAAGGAGGAGGATCCTGCTTGTGGACCAATCATTGATTCTATTGCTATCCAACCTCTGTACCCTCCTAGACTAACTAACAAGAACGTGTTGAAGAACGGTGGATTTGAAGAAGGACCATATGTGTTTCCTAACACATCATCGGGTGTGCTTATCCCGCCCAATATTGTAGACCACATCGAACACTCTCCCCTGCCAGGGTGGATGGTGGAGTCCCTAAAAGCTGTTAGATACATAGACTCGGACCATTTCTCAGTTCCCAAAGGGAAAAGAGCCGTGGAGCTAATAGGAGGAAAAGAAAGTGCCATTGCACAAGTAGCCAGAACCATTCCTGGCAAAACATACACCCTTTTCTTTGCTGTGGGAGACGCTGGCAATTCCTGTGAAGGGTCACTGAGTGTTGAAGCATATGTAGGCAAAGAAAGTGTAAAGGTGCCTTATGAGTCCAAAGGCAAAGGTGGGTTTAAACGTGCAACTCTAAAGTTTGTAGCTGTTAGTACAAGAACGCGCATTTTGTTCCTTAGCACCTTCTACAACATGAGAAGTGACGATCTCGCTTCGCTGTGTGGGCCTGTGATTGATGATGTCACCTTGATCAGTCTTCGCAAACCACACAGAAGATTCCACATTTGAGAATTTCATAAACCAGTGTAACGAATCAAATGTAGAATTCCACATTTGACGTCTGAGGTGTTGTATTATTTTTGCCTTTTCTTTGTTGTTTTCAACAGAGGCGAAACAGTAATGCATGTAATTCACTTTACTTTGTCCAACATATTCACTTCAACATCATGAGTTGCGAATTTCTGTTAATTCATGTCTCGGACTCTCGAGATATAAATACTGTTTGAACTTTGATCATGTGTTGTTCCGAATGCTCTAGTTGTGAAA

Coding sequences of Glyma06g07460

Limit To All Plant Sequences

>Glyma06g07460.1   sequence type=CDS   gene model=Glyma06g07460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGGTTCTCATTTCTATTGGTGCTCTTTTGTTGCTTCCATGTTGCCTTCTCCTTTACTCATGTGATCAATGGAGAGTTTGAGCTTGGACCAAAGCCACAGGACATGAAAGGCACGGTGGTGACCGGGGGTCCCCACTCTATACCCGGGTGGGAGATCTCTGGCTTCATTGAGTACATAAAATCAGGGCAGAAACAAGATGACATGTTGCTTGTGGTGCCAAATGGAGCTTATGCGGTGAGGCTTGGCAACGAGGCCTCTATTAAGCAAAATCTAAAAGTGGTAAAAGGAATGTACTATTCTATCACGTTTGTAGTGGCACGCACGTGTGCACAAGAGGAAAAGCTAAACGTTTCTGCCGCTCCAGATTGGGTGGTGCTCCCAATGCAAACGGTGTATGGTGGAAATGGTTGGGATGCTTATGCATGGTCTTTCCGAGCAGATTACCCTTCAGTAGACATGGTTTTTCATAACCCGGGAAAGGAGGAGGATCCTGCTTGTGGACCAATCATTGATTCTATTGCTATCCAACCTCTGTACCCTCCTAGACTAACTAACAAGAACGTGTTGAAGAACGGTGGATTTGAAGAAGGACCATATGTGTTTCCTAACACATCATCGGGTGTGCTTATCCCGCCCAATATTGTAGACCACATCGAACACTCTCCCCTGCCAGGGTGGATGGTGGAGTCCCTAAAAGCTGTTAGATACATAGACTCGGACCATTTCTCAGTTCCCAAAGGGAAAAGAGCCGTGGAGCTAATAGGAGGAAAAGAAAGTGCCATTGCACAAGTAGCCAGAACCATTCCTGGCAAAACATACACCCTTTTCTTTGCTGTGGGAGACGCTGGCAATTCCTGTGAAGGGTCACTGAGTGTTGAAGCATATGTAGGCAAAGAAAGTGTAAAGGTGCCTTATGAGTCCAAAGGCAAAGGTGGGTTTAAACGTGCAACTCTAAAGTTTGTAGCTGTTAGTACAAGAACGCGCATTTTGTTCCTTAGCACCTTCTACAACATGAGAAGTGACGATCTCGCTTCGCTGTGTGGGCCTGTGATTGATGATGTCACCTTGATCAGTCTTCGCAAACCACACAGAAGATTCCACATTTGA

>Glyma06g07460.2   sequence type=CDS   gene model=Glyma06g07460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGGTTCTCATTTCTATTGGTGCTCTTTTGTTGCTTCCATGTTGCCTTCTCCTTTACTCATGGAGCAGTGATCAATGGAGAGTTTGAGCTTGGACCAAAGCCACAGGACATGAAAGGCACGGTGGTGACCGGGGGTCCCCACTCTATACCCGGGTGGGAGATCTCTGGCTTCATTGAGTACATAAAATCAGGGCAGAAACAAGATGACATGTTGCTTGTGGTGCCAAATGGAGCTTATGCGGTGAGGCTTGGCAACGAGGCCTCTATTAAGCAAAATCTAAAAGTGGTAAAAGGAATGTACTATTCTATCACGTTTGTAGTGGCACGCACGTGTGCACAAGAGGAAAAGCTAAACGTTTCTGCCGCTCCAGATTGGGTGGTGCTCCCAATGCAAACGGTGTATGGTGGAAATGGTTGGGATGCTTATGCATGGTCTTTCCGAGCAGATTACCCTTCAGTAGACATGGTTTTTCATAACCCGGGAAAGGAGGAGGATCCTGCTTGTGGACCAATCATTGATTCTATTGCTATCCAACCTCTGTACCCTCCTAGACTAACTAACAAGAACGTGTTGAAGAACGGTGGATTTGAAGAAGGACCATATGTGTTTCCTAACACATCATCGGGTGTGCTTATCCCGCCCAATATTGTAGACCACATCGAACACTCTCCCCTGCCAGGGTGGATGGTGGAGTCCCTAAAAGCTGTTAGATACATAGACTCGGACCATTTCTCAGTTCCCAAAGGGAAAAGAGCCGTGGAGCTAATAGGAGGAAAAGAAAGTGCCATTGCACAAGTAGCCAGAACCATTCCTGGCAAAACATACACCCTTTTCTTTGCTGTGGGAGACGCTGGCAATTCCTGTGAAGGGTCACTGAGTGTTGAAGCATATGTAGGCAAAGAAAGTGTAAAGGTGCCTTATGAGTCCAAAGGCAAAGGTGGGTTTAAACGTGCAACTCTAAAGTTTGTAGCTGTTAGTACAAGAACGCGCATTTTGTTCCTTAGCACCTTCTACAACATGAGAAGTGACGATCTCGCTTCGCTGTGTGGGCCTGTGATTGATGATGTCACCTTGATCAGTCTTCGCAAACCACACAGAAGATTCCACATTTGA

Predicted protein sequences of Glyma06g07460

Limit To All Plant Sequences

>Glyma06g07460.1   sequence type=predicted peptide   gene model=Glyma06g07460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERFSFLLVLFCCFHVAFSFTHVINGEFELGPKPQDMKGTVVTGGPHSIPGWEISGFIEYIKSGQKQDDMLLVVPNGAYAVRLGNEASIKQNLKVVKGMYYSITFVVARTCAQEEKLNVSAAPDWVVLPMQTVYGGNGWDAYAWSFRADYPSVDMVFHNPGKEEDPACGPIIDSIAIQPLYPPRLTNKNVLKNGGFEEGPYVFPNTSSGVLIPPNIVDHIEHSPLPGWMVESLKAVRYIDSDHFSVPKGKRAVELIGGKESAIAQVARTIPGKTYTLFFAVGDAGNSCEGSLSVEAYVGKESVKVPYESKGKGGFKRATLKFVAVSTRTRILFLSTFYNMRSDDLASLCGPVIDDVTLISLRKPHRRFHI*

>Glyma06g07460.2   sequence type=predicted peptide   gene model=Glyma06g07460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERFSFLLVLFCCFHVAFSFTHGAVINGEFELGPKPQDMKGTVVTGGPHSIPGWEISGFIEYIKSGQKQDDMLLVVPNGAYAVRLGNEASIKQNLKVVKGMYYSITFVVARTCAQEEKLNVSAAPDWVVLPMQTVYGGNGWDAYAWSFRADYPSVDMVFHNPGKEEDPACGPIIDSIAIQPLYPPRLTNKNVLKNGGFEEGPYVFPNTSSGVLIPPNIVDHIEHSPLPGWMVESLKAVRYIDSDHFSVPKGKRAVELIGGKESAIAQVARTIPGKTYTLFFAVGDAGNSCEGSLSVEAYVGKESVKVPYESKGKGGFKRATLKFVAVSTRTRILFLSTFYNMRSDDLASLCGPVIDDVTLISLRKPHRRFHI*

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