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Report for Sequence Feature Glyma06g07431

Feature Type:gene_model
Chromosome:Gm06
Start:5408889
stop:5410033
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g07431
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G27110AT Annotation by Michelle Graham. TAIR10: FAR1-related sequence 3 | chr2:11576969-11580405 REVERSE LENGTH=851 SoyBaseE_val: 1.00E-12ISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0009639GO-bp Annotation by Michelle Graham. GO Biological Process: response to red or far red light SoyBaseN/AISS
GO:0016558GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PF04434PFAM SWIM zinc finger JGI ISS
PF10551PFAM MULE transposase domain JGI ISS
UniRef100_G7ZX29UniRef Annotation by Michelle Graham. Best UniRef hit: FAR1-related protein n=1 Tax=Medicago truncatula RepID=G7ZX29_MEDTR SoyBaseE_val: 9.00E-36ISS
UniRef100_Q1STQ9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger, SWIM-type n=1 Tax=Medicago truncatula RepID=Q1STQ9_MEDTR SoyBaseE_val: 1.00E-23ISS

Expression Patterns of Glyma06g07431
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g07431 not represented in the dataset
Glyma06g07431 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g07431 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g070800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g07431
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g07431
>Glyma06g07431.1   sequence type=CDS   gene model=Glyma06g07431   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGGAGCTTGTCCTAAAACTATTATCACAGACCAAGATGTTATTGTCATTAATGCAGTTGCAAGGGTGTTTCCTTCCGTTAATCATTTCTATGGCATGTGGCACATTGAGAAAAAATTATTTGTTGTGAAGAAGATTATATTGTTCACTGAACTCACTTACAAGATTCATGAAATTTATAAAGAGAAGCCTAACTACTATGTGACTTTTCATGCCATTTCAAAAGAAGGAAATTGTAGTTGTCACATGTTCGAATTTTTGGGTATTTTTTGTAGACATGTGTTAAATGTATTCCTAAAGAAAAATATTTTTTCTTTCCCTCCACAATATATTCTAAGTCAACGAACCATAATGCTAAGAATGAGAAGGATTGTTATACAAGAGCTAATGGGAAGACTTGATCTATTGGAAGTTGAAGAATCAAAGGAAGACTTTCGTAATCCGATAAATCAAGTTATTGCAAAAGTCTATAACACTGATACAACCTTGCATGATCCTCCTATTATGACAACAAAAAGGCATCCACGAACTTTGCGAATGAAAGGCGGTTTGGAATTACTCAAAAAAAAGTTCCCCTACTTGTAG
Predicted protein sequences of Glyma06g07431
>Glyma06g07431.1   sequence type=predicted peptide   gene model=Glyma06g07431   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGACPKTIITDQDVIVINAVARVFPSVNHFYGMWHIEKKLFVVKKIILFTELTYKIHEIYKEKPNYYVTFHAISKEGNCSCHMFEFLGIFCRHVLNVFLKKNIFSFPPQYILSQRTIMLRMRRIVIQELMGRLDLLEVEESKEDFRNPINQVIAKVYNTDTTLHDPPIMTTKRHPRTLRMKGGLELLKKKFPYL*






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