Glyma06g07360 - SoyBase

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Report for Sequence Feature Glyma06g07360

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5364918
stop:	5370526
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g07360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20060	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr5:6776800-6779447 FORWARD LENGTH=252	SoyBase	E_val: 4.00E-128	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG2112	KOG	Lysophospholipase	JGI		ISS
PTHR10655	Panther	LYSOPHOSPHOLIPASE-RELATED	JGI		ISS
PTHR10655:SF5	Panther	CARBOXYLESTERASE	JGI		ISS
PF02230	PFAM	Phospholipase/Carboxylesterase	JGI		ISS
UniRef100_G7JB53	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acyl-protein thioesterase n=1 Tax=Medicago truncatula RepID=G7JB53_MEDTR	SoyBase	E_val: 1.00E-159	ISS
UniRef100_I1K8X0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8X0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g07360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g07360

Paralog	Evidence	Comments
Glyma04g07280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g07360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g070100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g07360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g07360

Limit To All Plant Sequences

>Glyma06g07360.3   sequence type=transcript   gene model=Glyma06g07360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAAATCTTTAGGGTCTCTTGTTTAGAGTGTGAATGTGATGATGAGTACCGAGTAAGGGGCATTATGGCCAACACAAAAAGGTAGTAAGAAAACAAGCAGCTGTATGCTTGGGGTTTTGTGTTGTGTTGTGCAAGAGTGAAGAGTGAAGAGTGAAGTAACAAAACAAAAAGAGCTGAGGGAAAGTCGTGGGAACGAAGAAGCCAACAAAGACAGACCAGGGAGAAAAGGAAAAAGCCCTTATGCTTTTTTGGGTTTGTTTCTCACCAGCTTGAGTTGTTTAGAAGCTCATCTTTAGCATTGTGGCAGTGACCTGAGTGAGCATCTAGCTGTTTGAGTAGAAAATATGAGCTATAGTGGCTCCTCAATGAGTTCTGGTAGTGGATCTTCTAGAAGGACATTTGAGTTTGGAAGGACTCATGTGGTCAGACCTAAAGGGAAACATCAGGCAACTATAGTTTGGCTACATGGCCTTGGTGATAATGGCTCAAGCTGGTCCCAACTCTTGGAAACTCTTCCTCTTCCAAATATTAAATGGATTTGCCCAACTGCTCCTACACGGCCTGTAGCCTTATTTGGTGGATTTCCTTGCACTGCTTGGTTTGATGCTGGGGAGATTTCAGAAGATGCTCCTATTGATTTGGAGGGGTTAGATGCTTCTGCAGCACACGTTGCCAATCTTTTGTCAACAGAGCCTCCAAATATCAAACTTGGTATCGGGGGCTTCAGTATGGGTGCTGCAACTGCACTTTACTCAGCTACATGCCATATTTTGGGGCACTATGGGAATGGAAACATTTACCCTATCAACTTAAGTGCTATTGTTTCTTTAAGTGGCTGGCTTCCTTGTTCAAGGACTTTGAAAAACCAAATTGAACAATCACGCGATGGCATAAGGCGTGCAGCATTGTTGCCCTTGTTTCTCTGCCATGGAAGAGGTGATGATGTGGTTGCATATGAACATGGAGAGAGGTCTGCAGTGACCTTGAGTTCATCAGGATTCCAGAATCTTATATTTAGGAGCTACAACGGATTGGGCCACTATACAGTCCCCGAAGAGACAGATGAAGTTTGCAGGTGGCTAACTGCAAATTTGGGACTGGAGGGGTTTCGGTTGAATTAGAGTAAAGCTCAACAAGGTCATAGATTATAAAACCTTAGTTTTAGGCAATGAAAAGAGGGGCTATAGAATACATAGTGGTGTGGTGGGGTGGGGTGGGGTATATTGGTAATGGTATAGCCGCTTTGTTCTCTCTCTTATATTCTCATTGTACTAAATAAATGTTTTTTGATCCAAGGGTCACTCACTATCTTTATTGCTTTGGGATTTGGTGGGAATGCTTTGGTGGAAGGACATGGATAGTTTCCTTTGCATCCAGCAAATTTTGTTTATTTCATTCGGGCATGGATATGTATGTTGCTTTCTGTATTCATATTGTCTAAATAAAGTCAAATTTTAGTAAGTCATATTTATCAATATTGCCTATGTGATTTCATTATAGATATAGAACAGCAAAAACCTATGGTTGCTGGGGGCATGTGAATGGTGACAATGTTGTTTCTGTAAAACGTCCGCAAAACAATTTGGACCCTGCCTCTCTATTCTTGAGAAGGTTCTTCAACAAATGCTTACTTT

Coding sequences of Glyma06g07360

Limit To All Plant Sequences

>Glyma06g07360.2   sequence type=CDS   gene model=Glyma06g07360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTATAGTGGCTCCTCAATGAGTTCTGGTAGTGGATCTTCTAGAAGGACATTTGAGTTTGGAAGGACTCATGTGGTCAGACCTAAAGGGAAACATCAGGCAACTATAGTTTGGCTACATGGCCTTGGTGATAATGGCTCAAGCTGGTCCCAACTCTTGGAAACTCTTCCTCTTCCAAATATTAAATGGATTTGCCCAACTGCTCCTACACGGCCTGTAGCCTTATTTGGTGGATTTCCTTGCACTGCTTGGTTTGATGCTGGGGAGATTTCAGAAGATGCTCCTATTGATTTGGAGGGGTTAGATGCTTCTGCAGCACACGTTGCCAATCTTTTGTCAACAGAGCCTCCAAATATCAAACTTGGTATCGGGGGCTTCAGTATGGGTGCTGCAACTGCACTTTACTCAGCTACATGCCATATTTTGGGGCACTATGGGAATGGAAACATTTACCCTATCAACTTAAGTGCTATTGTTTCTTTAAGTGGCTGGCTTCCTTGTTCAAGGACTTTGAAAAACCAAATTGAACAATCACGCGATGGCATAAGGCGTGCAGCATTGTTGCCCTTGTTTCTCTGCCATGGAAGAGGTGATGATGTGGTTGCATATGAACATGGAGAGAGGTCTGCAGTGACCTTGAGTTCATCAGGATTCCAGAATCTTATATTTAGGAGCTACAACGGATTGGGCCACTATACAGTCCCCGAAGAGACAGATGAAGTTTGCAGGTGGCTAACTGCAAATTTGGGACTGGAGGGGTTTCGGTTGAATTAG

>Glyma06g07360.3   sequence type=CDS   gene model=Glyma06g07360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTATAGTGGCTCCTCAATGAGTTCTGGTAGTGGATCTTCTAGAAGGACATTTGAGTTTGGAAGGACTCATGTGGTCAGACCTAAAGGGAAACATCAGGCAACTATAGTTTGGCTACATGGCCTTGGTGATAATGGCTCAAGCTGGTCCCAACTCTTGGAAACTCTTCCTCTTCCAAATATTAAATGGATTTGCCCAACTGCTCCTACACGGCCTGTAGCCTTATTTGGTGGATTTCCTTGCACTGCTTGGTTTGATGCTGGGGAGATTTCAGAAGATGCTCCTATTGATTTGGAGGGGTTAGATGCTTCTGCAGCACACGTTGCCAATCTTTTGTCAACAGAGCCTCCAAATATCAAACTTGGTATCGGGGGCTTCAGTATGGGTGCTGCAACTGCACTTTACTCAGCTACATGCCATATTTTGGGGCACTATGGGAATGGAAACATTTACCCTATCAACTTAAGTGCTATTGTTTCTTTAAGTGGCTGGCTTCCTTGTTCAAGGACTTTGAAAAACCAAATTGAACAATCACGCGATGGCATAAGGCGTGCAGCATTGTTGCCCTTGTTTCTCTGCCATGGAAGAGGTGATGATGTGGTTGCATATGAACATGGAGAGAGGTCTGCAGTGACCTTGAGTTCATCAGGATTCCAGAATCTTATATTTAGGAGCTACAACGGATTGGGCCACTATACAGTCCCCGAAGAGACAGATGAAGTTTGCAGGTGGCTAACTGCAAATTTGGGACTGGAGGGGTTTCGGTTGAATTAG

Predicted protein sequences of Glyma06g07360

Limit To All Plant Sequences

>Glyma06g07360.2   sequence type=predicted peptide   gene model=Glyma06g07360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYSGSSMSSGSGSSRRTFEFGRTHVVRPKGKHQATIVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPVALFGGFPCTAWFDAGEISEDAPIDLEGLDASAAHVANLLSTEPPNIKLGIGGFSMGAATALYSATCHILGHYGNGNIYPINLSAIVSLSGWLPCSRTLKNQIEQSRDGIRRAALLPLFLCHGRGDDVVAYEHGERSAVTLSSSGFQNLIFRSYNGLGHYTVPEETDEVCRWLTANLGLEGFRLN*

>Glyma06g07360.3   sequence type=predicted peptide   gene model=Glyma06g07360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYSGSSMSSGSGSSRRTFEFGRTHVVRPKGKHQATIVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPVALFGGFPCTAWFDAGEISEDAPIDLEGLDASAAHVANLLSTEPPNIKLGIGGFSMGAATALYSATCHILGHYGNGNIYPINLSAIVSLSGWLPCSRTLKNQIEQSRDGIRRAALLPLFLCHGRGDDVVAYEHGERSAVTLSSSGFQNLIFRSYNGLGHYTVPEETDEVCRWLTANLGLEGFRLN*

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