Glyma06g07350 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g07350

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5356152
stop:	5358620
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g07350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15680	AT	Annotation by Michelle Graham. TAIR10: Ran BP2/NZF zinc finger-like superfamily protein \| chr3:5315437-5316048 FORWARD LENGTH=164	SoyBase	E_val: 2.00E-62	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR23111	Panther	ZINC FINGER PROTEIN	JGI		ISS
PF00641	PFAM	Zn-finger in Ran binding protein and others	JGI		ISS
UniRef100_G7JB51	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein-like protein n=1 Tax=Medicago truncatula RepID=G7JB51_MEDTR	SoyBase	E_val: 6.00E-74	ISS
UniRef100_I1K8W8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8W8_SOYBN	SoyBase	E_val: 8.00E-111	ISS

Expression Patterns of Glyma06g07350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g07350

Paralog	Evidence	Comments
Glyma04g07270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g07350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g069900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g07350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g07350

Limit To All Plant Sequences

>Glyma06g07350.4   sequence type=transcript   gene model=Glyma06g07350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCACCGGTTGCCCAGCCTGCGCACTGGCTAGCTAGTTACTTCGATCTGCCCGATTTTCGAGGCCTTAATGGACAGTATATAAACCACCTCAGCCTCTTCACTCATCTCCACCACAAACCACAATTAAACAACACACTCTCCTTATTCAACTTGTGGAGCTACTTCCACCCACTATCTACCTTCATTTTATTTTCAGTCTCCAAACTCCAAAGGGAAAATGAACAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTGAACTTCCAGAGAAGAGAATCATGTCAGCGATGCGGGGAGCCGAGGAGTGGCGGCGGCGACTACGGTGGCGGCTTCGGTGGGGGCAGAGGCTCTTCCTCCTTTGGCGGATTCACCACTGGCCCGGATGTTCGCCCCGGTGACTGGTACTGCACCGTCGGAAACTGTGGAGCCCACAACTTTGCCAGCCGCTCCAGCTGCTTCAAGTGCGGTGCCCCCAAGGAGGACTCCTCCGCCGGCCCATTCGACGTCGACATGCCCCGAATGAGACCCTTCGGCTTTGGCGGCAGCGGCGGCGGCGGCTCCTCTGCTCGCCCTGGCTGGAAATCCGGTGACTGGATATGCACCAGGTCAGGATGCAACGAGCATAACTTCGCCAATAGAATGGAGTGCTACCGATGCAATGCACCGAGGGACTCCAGTAGTGCCAGGTCTCCCTATTCATCGTAGAGTTCCTGATCATTTGATGTGGTAATTGTTTGCTGTCCAAGGAGAGAATCGAGAGGCTATCCCTATTTCCTAGTGATAGTTTACTTTTTTTTTTTTTTTTGTTCACTTGCTTCCATATGTTACTTTCTTCATCATCTCATGCGGATATTTATTTTTGCTTTTTTGATTTTCTTCCAGCTAGGAAGCTTTAGGTGAATTATGATTTTGAGGTTTTGTTGGCGCTGAGTGATTCTGGTATATGATGACTCAGCAGCTAGCCCATGTACTTTTATAAGTATCAACAATTTAATATGAGTACGTGTTAATGTGTTTCGAGAGGGGGCTAGCTTCTAAGCCTCATCATCACTATGATTTGGTGCAAAGATGTTCTTTATCTAATTCTCCGATATGTGTTCAGAAAAGATGCTCTTTGCTTCTGTCTTTCTCTCTTTAACTCTCAGATATACACATATATATAGCTTTATAGTGGGG

Coding sequences of Glyma06g07350

Limit To All Plant Sequences

>Glyma06g07350.3   sequence type=CDS   gene model=Glyma06g07350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTGAACTTCCAGAGAAGAGAATCATGTCAGCGATGCGGGGAGCCGAGGAGTGGCGGCGGCGACTACGGTGGCGGCTTCGGTGGGGGCAGAGGCTCTTCCTCCTTTGGCGGATTCACCACTGGCCCGGATGTTCGCCCCGGTGACTGGTACTGCACCGTCGGAAACTGTGGAGCCCACAACTTTGCCAGCCGCTCCAGCTGCTTCAAGTGCGGTGCCCCCAAGGAGGACTCCTCCGCCGGCCCATTCGACGTCGACATGCCCCGAATGAGACCCTTCGGCTTTGGCGGCAGCGGCGGCGGCGGCTCCTCTGCTCGCCCTGGCTGGAAATCCGGTGACTGGATATGCACCAGGTCAGGATGCAACGAGCATAACTTCGCCAATAGAATGGAGTGCTACCGATGCAATGCACCGAGGGACTCCAGTAGTGCCAGGTCTCCCTATTCATCGTAG

>Glyma06g07350.4   sequence type=CDS   gene model=Glyma06g07350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTGAACTTCCAGAGAAGAGAATCATGTCAGCGATGCGGGGAGCCGAGGAGTGGCGGCGGCGACTACGGTGGCGGCTTCGGTGGGGGCAGAGGCTCTTCCTCCTTTGGCGGATTCACCACTGGCCCGGATGTTCGCCCCGGTGACTGGTACTGCACCGTCGGAAACTGTGGAGCCCACAACTTTGCCAGCCGCTCCAGCTGCTTCAAGTGCGGTGCCCCCAAGGAGGACTCCTCCGCCGGCCCATTCGACGTCGACATGCCCCGAATGAGACCCTTCGGCTTTGGCGGCAGCGGCGGCGGCGGCTCCTCTGCTCGCCCTGGCTGGAAATCCGGTGACTGGATATGCACCAGGTCAGGATGCAACGAGCATAACTTCGCCAATAGAATGGAGTGCTACCGATGCAATGCACCGAGGGACTCCAGTAGTGCCAGGTCTCCCTATTCATCGTAG

Predicted protein sequences of Glyma06g07350

Limit To All Plant Sequences

>Glyma06g07350.3   sequence type=predicted peptide   gene model=Glyma06g07350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGGDYGGGFGGGRGSSSFGGFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKEDSSAGPFDVDMPRMRPFGFGGSGGGGSSARPGWKSGDWICTRSGCNEHNFANRMECYRCNAPRDSSSARSPYSS*

>Glyma06g07350.4   sequence type=predicted peptide   gene model=Glyma06g07350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGGDYGGGFGGGRGSSSFGGFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKEDSSAGPFDVDMPRMRPFGFGGSGGGGSSARPGWKSGDWICTRSGCNEHNFANRMECYRCNAPRDSSSARSPYSS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain