Glyma06g07170 - SoyBase

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Report for Sequence Feature Glyma06g07170

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5207207
stop:	5210535
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g07170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32300	AT	Annotation by Michelle Graham. TAIR10: S-domain-2 5 \| chr4:15599970-15602435 FORWARD LENGTH=821	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
GO:0031625	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin protein ligase binding	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF926	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF01453	PFAM	D-mannose binding lectin	JGI		ISS
UniRef100_G7JB13	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinase-like protein n=1 Tax=Medicago truncatula RepID=G7JB13_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A004	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A004 related cluster n=1 Tax=unknown RepID=UPI000233A004	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g07170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g07170

Paralog	Evidence	Comments
Glyma04g07080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g07170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g068100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g07170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g07170

Limit To All Plant Sequences

>Glyma06g07170.2   sequence type=CDS   gene model=Glyma06g07170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAAACATTGGTCTTTCTTCCATATTACGGGTACCCTTTTCCTTTTGTGCAAAGTCTGTCTAGCTGGGAGTCAATATTCTGGACGTGTCTTACCCGGGGTATTAAATGGTTCTCAAATGAATTGGATTGACAGAGATGGCAAGTTCCTTGTCTCAAAAAAGGTTCAGTTTGCCTTTGGCTTTGTCACCACAACGAATGACACCACCAAGTTTCTACTTGCAATCATCCATGTGGCCACTACCAGGGTAATTTGGACCGCCAATAGAGCAGTTCCTGTTGCTAACTCGGACAATTTTGTGTTTGATGAAAAGGGCAACGCTTTCTTACAGAAAGATGGAACCTTGGTTTGGTCAACAAGCACAAGTAACAAAGGGGTTTCTTCAATGGAATTGCTTGACACAGGGAATTTGGTTTTGCTTGGAATTGATAATAGCACAGTGATTTGGCAAAGTTTTAGCCATCCAACAGATACTTTGTTGCCAACTCAAGAGTTCACTGAGGGAATGAAACTCATCAGTGATCCTAGCTCAAACAACTTGACCCATGTTCTTGAGATCAAGTCTGGTAATGTTGTTCTCACTGCAGGTTTTCGAACCCCGCAGCCTTATTGGACTATGCAGAAGGACAACCGCAGAGTCATCAACAAGGGCGGTGATGCGGTGGCTTCAGCAAACATTAGTGGAAATTCATGGAGGTTCTATGACAAAAGCAAATCTTTGTTGTGGCAATTCATTTTCTCTGCAGATCAAGGCACAAATGCGACTTGGATTGCTGTTTTGGGGAGTGATGGCTTCATCACTTTCTCGAACCTCAACGATGGAGGGTCAAATGCTGCTTCTCCAACAACAATACCCCAAGATTCTTGTGCTACACCGGAACCTTGTGATGCATACACCATATGCACAGGTGACCAAAGAAGGTGTAGTTGCCCTTCTGTTATTCCTAGTTGCAAACCTGGTTTTGATTCTCCCTGTGGTGGTGACTCAGAAAAGTCCATTCAGTTGGTTAAAGCTGATGATGGGCTTGATTACTTTGCGCTTCAATTCCTTCAACCTTTTTCGAAAACCGATTTGGCTGGTTGCCAATCTTCTTGCCGCGGAAACTGCTCGTGCCTTGCTTTGTTCTTCCACAGAAGTTCAGGGGACTGTTTCCTTTTGGACAGTGTAGGTAGCTTTCAGAAACCTGATTCTGATTCTGGTTATGTTTCTTACATTAAGGTCTCGACAGATGGAGGCGCTGGCACGGGTTCTGGGGGCGGCGGAGGTGTCCATAAGCACACCATAGTTGTTGTGGTCATTGTCATAATAGCCTTGGTTGTCATTTGTGGTCTGGTCTTTGGGGGAGTTAGATACCACAGAAGAAAGCAAAGGTTGCCTGAGTCTCCTAGAGAAGGTTCAGAAGAGGACAATTTCTTGGAGAATTTGACTGGCATGCCAATCCGTTACAGCTACAAGGACCTTGAGGCGGCCACTAATAACTTCTCTGTGAAGCTTGGGCAAGGGGGTTTTGGGTCAGTGTACAAAGGAGTTCTACCCGATGGGACTCAGTTAGCAGTGAAGAAGTTGGAAGGTATTGGACAAGGGAAGAAAGAGTTCAGGGCTGAAGTTAGCATCATTGGTAGCATTCATCATCTTCATTTGGTTAGGCTTAAGGGATTCTGTGCTGATGGAACTCATAGGCTCCTTGCTTATGAATACCTGTCTAATGGCTCCTTGGATAAATGGATATTCAAGAAAAACAAAGGTGAGTTTCAGTTGGATTGGGATACTAGGTTCAATATAGCTCTGGGAACAGCAAAAGGACTTGCTTATCTGCATGAAGATTGTGACTCAAAGATTGTTCATTGTGACATCAAGCCGGAAAACGTGCTTCTGGATGACCACTTCATGGCCAAGGTTTCGGATTTTGGGCTGGCTAAGCTCATGAACCGAGAACAAAGCCATGTTTTCACAACACTGAGGGGCACCAGGGGATATCTTGCACCGGAGTGGATAACAAACTATGCCATATCAGAGAAAAGTGATGTCTATAGCTATGGTATGGTGCTACTAGAGATCATTGGGGGAAGGAAAAACTATGATCCCAGTAAGTCTTCAGAGAAGTCCCATTTCCCAACTTATGCTTATAAGATGATGGAAGAAGGGAAGCTGAGAGATATTTTTGACTCGGAGTTGAAAATTGATGAGAATGATGATAGGTTTCAATGTGCTATAAAAGTTGCATTGTGGTGCATACAGGAAGACATGTCAATGAGGCCATCTATGACCAGAGTTGTCCAAATGTTGGAGGGTATTTGTATTGTTCCTAACCCACCAACCAGTTCTTCGTTGGGTTCTCGCCTTTATGCCACTGTGTTCAAATCCTCCAGTGAAGGGGCCACCTCTTCTGGTCCCTCAGACTGTAACAGTGATGCTTATCTCTCCGCGGTTCGCCTTTCAGGGCCTAGATAA

Predicted protein sequences of Glyma06g07170

Limit To All Plant Sequences

>Glyma06g07170.2   sequence type=predicted peptide   gene model=Glyma06g07170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKHWSFFHITGTLFLLCKVCLAGSQYSGRVLPGVLNGSQMNWIDRDGKFLVSKKVQFAFGFVTTTNDTTKFLLAIIHVATTRVIWTANRAVPVANSDNFVFDEKGNAFLQKDGTLVWSTSTSNKGVSSMELLDTGNLVLLGIDNSTVIWQSFSHPTDTLLPTQEFTEGMKLISDPSSNNLTHVLEIKSGNVVLTAGFRTPQPYWTMQKDNRRVINKGGDAVASANISGNSWRFYDKSKSLLWQFIFSADQGTNATWIAVLGSDGFITFSNLNDGGSNAASPTTIPQDSCATPEPCDAYTICTGDQRRCSCPSVIPSCKPGFDSPCGGDSEKSIQLVKADDGLDYFALQFLQPFSKTDLAGCQSSCRGNCSCLALFFHRSSGDCFLLDSVGSFQKPDSDSGYVSYIKVSTDGGAGTGSGGGGGVHKHTIVVVVIVIIALVVICGLVFGGVRYHRRKQRLPESPREGSEEDNFLENLTGMPIRYSYKDLEAATNNFSVKLGQGGFGSVYKGVLPDGTQLAVKKLEGIGQGKKEFRAEVSIIGSIHHLHLVRLKGFCADGTHRLLAYEYLSNGSLDKWIFKKNKGEFQLDWDTRFNIALGTAKGLAYLHEDCDSKIVHCDIKPENVLLDDHFMAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPSKSSEKSHFPTYAYKMMEEGKLRDIFDSELKIDENDDRFQCAIKVALWCIQEDMSMRPSMTRVVQMLEGICIVPNPPTSSSLGSRLYATVFKSSSEGATSSGPSDCNSDAYLSAVRLSGPR*

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