Report for Sequence Feature Glyma06g07080
Feature Type: gene_model
Chromosome: Gm06
Start: 5105199
stop: 5114378
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g07080
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G32160 AT
Annotation by Michelle Graham. TAIR10: Phox (PX) domain-containing protein | chr4:15529056-15532892 FORWARD LENGTH=723
SoyBase E_val: 0 ISS
GO:0007154 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell communication
SoyBase N/A ISS
GO:0007165 GO-bp
Annotation by Michelle Graham. GO Biological Process: signal transduction
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0035091 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding
SoyBase N/A ISS
PTHR10555 Panther
SORTING NEXIN
JGI ISS
PTHR10555:SF65 Panther
PHOX (PX) DOMAIN-CONTAINING PROTEIN
JGI ISS
PF00787 PFAM
PX domain
JGI ISS
UniRef100_F4JTJ2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phox (PX) domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4JTJ2_ARATH
SoyBase E_val: 0 ISS
UniRef100_UPI000233A000 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233A000 related cluster n=1 Tax=unknown RepID=UPI000233A000
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g07080
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g07080
Paralog Evidence Comments
Glyma04g06980 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g07080 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g067100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g07080
Coding sequences of Glyma06g07080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g07080.2 sequence type=CDS gene model=Glyma06g07080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAGAGACGAAGTCCTCCGAAGCACAGGCACGATGGGACTTCGCCGCTGCCTCTCGGCATGGATTGGAGCCCTGCGCCTCGAAAATTGAATGGGCGAGATACAGTGTGGCCACACAATCATCGTACTGGTTGGAGTTATTGTGTCACAATACCTTCTTGGGCCTTTGTTCCAAAATCAAGGAATTCAGATCCTATAGTGTTCTACAGGGTTCAAGTTGGTGTACAGTCACCGGAAGGAATTACAAAGGTCCATGGAGTCTTAAGAAGGTTCAATGATTTTCTAAAGTTGTTTGCTGATATTAAAAAGGAGTTTCCCAGGAAAAATATCCCTCCAGCGCCACCCAAGGGACTCTTGCGGTTGAAAAGCCGAGCTTTGTTAGAAGAGAGAAGGTGCTCTTTGGAGGAGTGGATCGCCAAACTATTGTCTGACATTGATATATCAAGATGTACTGCAGTGGCGTCATTTCTCGAACTAGAAGCAGCTGCTAGATCTTCATTCCAAGATGCAAACCAGCAGAATTCTGAAACAGACCCAGATTCCAGCAACACAGTTTATTCTGTGCAATCACCTCTCCAGTCGAGCTTATCATTAGTTGCTGGCAGTTCCTCTGTTGCCTCAGATTATGGTAGTGATACTGCATATGAGCCATCTGACCTAGGAACACCAAGAATTGGACGGGACGATAATTCTGAAGTTGGCACAGATGATTTAACATTAGATGAAGATATGACGAATCCAATAGAAAAGCTTGTGAAATATGGCATAACAAATATTGACGAAGGTTTGTTTATGGGTCAGACTATTCTAGAGCAATTGGAAGGCCTTCCTAGGCATAAAGCAAATGCCAGATATGTGAACTATGTTGCAGAAAAGGACAAAAATAATGGTAATTTATATGATTCTTCACTTTTAGCTAATAATAACATGGAGCTTTTCTCTGAGCCTGGGCATGCTAAGGTGTTTGGTCATGTTCGTAAGCTTTCAAATGAGAGTGTTGAAAGCGATGGAAGCTCAATACGAGGTAGTGACATGTCTAATTTTGGGATTCCAAGTTCATCTGGTGATGGCTCTCATGACCTTCCTGGATCTGCTTTGGTTTCAAGAGAGACAGATATTATGGGCCACACAAAGTCGAAGTCTACTGGTGATACTCAATTAGTCCTTCCACTAGATCAACGCAATAAATTGAACAGGATTCTTTCAACCATGCAGCGAAGGCTAGGCACTGCAAAAACTGATATGGAGGACCTTATAGTTAGATTAAATCAAGAAATAGCTGCAAAGGATTTTCTCGCAACAAAGCTCAAGGATTTGGAAGTAGAACTTGAAACTACCAAACAGAAAAATAAGGAGAACTTGCAGCAGGCTATTCTAATTGAGAGAGAAAGGTTTACCCAAATGCAGTGGGATATGGAGGAACTTAGAAGAAAATCATTGGAAATGGAGATGAAATTAAAGTCTGAATCGGGGAGAAATTCTTATCAGGATTTGACTAAGGAATCAATTGTTCAGCAGAATGATGTACTGTATGAGAATTTAGATGCTACTAAGGAGCAGCTGGAAATTTTGTCAAAACAGTATGGAGAGCTAGAAGCAAAATCCAAAGCAGATGTTAAAGTTCTCGTTAAAGAGGTCAAATCTCTCCGTAATTCCCAAACAAAGTTAAAGAAAGAACTTAGTGAGTCAATAAAGGAACACAGTGAAACTGAGAAACTACTTCTGCATGAAAGAGAGAAGAGGGAACAGGCAGAAGCTGCTCGGAGAAAACTGCTGGAGAAATGCAGGGTTCTTTTCAACCAGCTTCAAGAATGCAATGTCAGTCTTCCTTATGAATACGAAGATAGGACAATCGTGAATTCATCATCATCAACTGATGCTTTTAATCAGTTAACGACATCTGATGACCAAATGGACATCCTACTAGCAGAGGTAGAAAACTTAGAGAAGGACTACGGAAGTGCGGCTTCCAATGTAGATAAAACCACCAATGACATAAAAGATGGTGTAATCTGTGATGATGAAGTGAGAAAGATCATAGCAGATTTGTTCATCGATAATGTTAGATTGAGAAAACAGACAAACCGCGTCACAAGGCAGGCTCTCAAATTGGATATGACAGCAAGTGATGATTCCCCTTCGGTGGAGACTCTAACAAGTATTTAG
Predicted protein sequences of Glyma06g07080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g07080.2 sequence type=predicted peptide gene model=Glyma06g07080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQRRSPPKHRHDGTSPLPLGMDWSPAPRKLNGRDTVWPHNHRTGWSYCVTIPSWAFVPKSRNSDPIVFYRVQVGVQSPEGITKVHGVLRRFNDFLKLFADIKKEFPRKNIPPAPPKGLLRLKSRALLEERRCSLEEWIAKLLSDIDISRCTAVASFLELEAAARSSFQDANQQNSETDPDSSNTVYSVQSPLQSSLSLVAGSSSVASDYGSDTAYEPSDLGTPRIGRDDNSEVGTDDLTLDEDMTNPIEKLVKYGITNIDEGLFMGQTILEQLEGLPRHKANARYVNYVAEKDKNNGNLYDSSLLANNNMELFSEPGHAKVFGHVRKLSNESVESDGSSIRGSDMSNFGIPSSSGDGSHDLPGSALVSRETDIMGHTKSKSTGDTQLVLPLDQRNKLNRILSTMQRRLGTAKTDMEDLIVRLNQEIAAKDFLATKLKDLEVELETTKQKNKENLQQAILIERERFTQMQWDMEELRRKSLEMEMKLKSESGRNSYQDLTKESIVQQNDVLYENLDATKEQLEILSKQYGELEAKSKADVKVLVKEVKSLRNSQTKLKKELSESIKEHSETEKLLLHEREKREQAEAARRKLLEKCRVLFNQLQECNVSLPYEYEDRTIVNSSSSTDAFNQLTTSDDQMDILLAEVENLEKDYGSAASNVDKTTNDIKDGVICDDEVRKIIADLFIDNVRLRKQTNRVTRQALKLDMTASDDSPSVETLTSI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
