Glyma06g07040 - SoyBase

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Report for Sequence Feature Glyma06g07040

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5081831
stop:	5084973
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g07040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25310	AT	Annotation by Michelle Graham. TAIR10: Exostosin family protein \| chr5:8784820-8787235 FORWARD LENGTH=480	SoyBase	E_val: 5.00E-177	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG1021	KOG	Acetylglucosaminyltransferase EXT1/exostosin 1	JGI		ISS
PTHR11062	Panther	EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED	JGI		ISS
PTHR11062:SF1	Panther	EXOSTOSIN RELATED	JGI		ISS
PF03016	PFAM	Exostosin family	JGI		ISS
UniRef100_B9RP20	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9RP20_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K8T1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8T1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g07040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g07040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g066700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g07040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g07040

Limit To All Plant Sequences

>Glyma06g07040.2   sequence type=CDS   gene model=Glyma06g07040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATAAGATTTGTCGTCGCCGTTTGTTTCTATTCCAATTTGTGTTGCTCTTTCTGTGGTTGATCCTCATTGAATGGCTACACCCATGGCAGTTCATCAGATTCACCGAATCGAATCCGGAATATTCCGTTTCTCTTCATCAACTTCGAAGACACCTTTTCGGCCAGAATCAACTTCGTGCTGATGGAGACGCCGCCGCCGCCGCTCACTCAAATAATACCACCGTAACCAGGGATGTGGTAAGAGTGAATATCAGAGAAGAAAAGCGAGAAGAAGGACTCGCACGAGCAAGAGCTGCGATGCGCATAGCGGCATTAACTGGAACAAATCTCACAACACACGATAACGACGACATTCTCGCTGGAACTGTTTATCGTAACCCTCGCTTATTTCACCAGAGCTACTTGGAGATGGAGAAGTTATTCAAGGTATACGTATACCCTGATGGGGACCTACCAATTGTTCACGATGCCCCCTGCAAGGACATATACTCGATTGAAGGGAGGTTCCTCCACGAGATGGAACATGGGGTTGGGAGGTTTAGGACTAACGACCCCACTGCAGCTCACGTTTACTTTCTTCCATTCAGCGTGACATGGATGGTCAAGTACTTCTATAGTACACCACACTCTTACGACGTCACTCCTTTAAAGAATTTTGTTTCTGACTACGTGAGAGTGATATCTACGAAGTATCCCTTCTGGAATAAAACTCATGGTGCTGATCACTTCATGGTTGCTTGTCATGATTGGGGTCCTTATGCATCAGAGGGAAACCCTTTCCTCTACAACACCTCCATCCGGGTCTTGTGCAATGCCAACACTTCTGAAGGCTTCAACCCTCAAAAGGATGTACCTCTGCCGGAAATCCACCTCTATGGAGGTGAAGTATCCCCTAAACTCCTTTCACCTCCACCGGGCAACGCCACGCGCCGCTATCTCGCCTTCTTTGCCGGTGGCATGCACGGCCCAATTCGCCCTATCCTGCTCCACCACTGGAATAACCGAGACATTAATGACGACATGCGTGTGTACGAGTATCTCCCCAAAGACCTAGACTATTATTCCTTCATGCTGAACTCCAAGTTCTGCCTTTGCCCAAGTGGGTACGAAGTGGCTAGCCCGAGAATCGTGGAGTCAATTTATGCCGAATGCGTGCCCGTGATCCTATCAAAGAATTATACGCTTCCCTTCAGTGATGTACTGCGATGGGAGTCATTTTCAGTGCAGGTGGATGTTTCAGATATTCCAAGGCTGAAAGAGGTGCTTAGTGCAATTCCAGAGAGCGAGTACCAGAAACTCAAGCATGGAGTAAGGGCTGTGAGGAGACATTTTACTCTGAATCAACCGGCTAAGAGACTTGATGTCTTTCACATGATCTTGCATTCCATATGGCTCAGAAGATTAGATATAGATCTTAGATAA

Predicted protein sequences of Glyma06g07040

Limit To All Plant Sequences

>Glyma06g07040.2   sequence type=predicted peptide   gene model=Glyma06g07040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYKICRRRLFLFQFVLLFLWLILIEWLHPWQFIRFTESNPEYSVSLHQLRRHLFGQNQLRADGDAAAAAHSNNTTVTRDVVRVNIREEKREEGLARARAAMRIAALTGTNLTTHDNDDILAGTVYRNPRLFHQSYLEMEKLFKVYVYPDGDLPIVHDAPCKDIYSIEGRFLHEMEHGVGRFRTNDPTAAHVYFLPFSVTWMVKYFYSTPHSYDVTPLKNFVSDYVRVISTKYPFWNKTHGADHFMVACHDWGPYASEGNPFLYNTSIRVLCNANTSEGFNPQKDVPLPEIHLYGGEVSPKLLSPPPGNATRRYLAFFAGGMHGPIRPILLHHWNNRDINDDMRVYEYLPKDLDYYSFMLNSKFCLCPSGYEVASPRIVESIYAECVPVILSKNYTLPFSDVLRWESFSVQVDVSDIPRLKEVLSAIPESEYQKLKHGVRAVRRHFTLNQPAKRLDVFHMILHSIWLRRLDIDLR*

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