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Report for Sequence Feature Glyma06g07030

Feature Type:gene_model
Chromosome:Gm06
Start:5073890
stop:5079124
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g07030
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11100AT Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:3532402-3535221 FORWARD LENGTH=569 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009887GO-bp Annotation by Michelle Graham. GO Biological Process: organ morphogenesis SoyBaseN/AISS
GO:0009888GO-bp Annotation by Michelle Graham. GO Biological Process: tissue development SoyBaseN/AISS
GO:0010638GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0019745GO-bp Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process SoyBaseN/AISS
GO:0033044GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR10774Panther CALCIUM-DEPENDENT LIPID-BINDING PROTEIN (CALB RELATED) JGI ISS
PTHR10774:SF23Panther SUBFAMILY NOT NAMED JGI ISS
PF00168PFAM C2 domain JGI ISS
UniRef100_G7JAG6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Synaptotagmin-1 n=1 Tax=Medicago truncatula RepID=G7JAG6_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002339FFEUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339FFE related cluster n=1 Tax=unknown RepID=UPI0002339FFE SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g07030
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g07030
ParalogEvidenceComments
Glyma04g06950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g07030 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g066600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g07030
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g07030
>Glyma06g07030.1   sequence type=CDS   gene model=Glyma06g07030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATTCATCAGCGGCATGATCGTTGGTATCGCCATTGGCATCGTATTGATCGTCGCTTTCGCTCGTCAGGGAAGCGTTCGATCCAAGCGTCGCTCCGATTTGGCAAAGACGATAGCACAGTTTGCGAGGATGACAGTGGAAGATTCCAGAAAAATTTTGCCTCCTAAGTTCTATCCATCGTGGGTGTTAAGTTGGCTTAATAGCCAAGTCGAGAAGATTTGGCCATTCGTTAATGAGGCAGCTTCAGAGTTGATAAGAACCAATGTGGAACCAATTCTTGAACAATATAGGCCGATTATTTTGTCTTCTCTCACCTTCTCCAAGTTGACCCTTGGCACTGTGGCTCCACAATTTACAGGAGTTACAATTGTTGAAGAGAATAGTGGGCCTGAGGGGGTGACTATGGATCTTGAGATGCAGTGGGATGGTAACCCGAACATCGTTCTTGACATTAAAACCCGAGTTGGTGTTGTACTTCCTGTACAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAGCCACTAGTGGATGAGTTCCCTGCTTTTGGAGCTGTTTGTTTTTCCTTGAAAGAAAAGAAAGATCTGGATTTTACTCTCAAGGTTATTGGTGGTGATTTATCAACTTTACCGGGGATATCTGATGCTATAGAGGAAACAATTAGAGATGCCATTGAAGACTCTATAACTTGGCCAGTACGCAAAGTTATACCAATTCTACCCGGGGATTACAGTAATCTAGAGTTGAAACCGGTTGGAAAACTAGAAGTAAAACTAGTGCAAGCAAAGAACTTAACAAATAAAGATATAGTTGGGAAATCCGATCCTTATGCTGTCATATTTGTACGCCCCCTCCGTGACAGAACCAAAACCAGTAAAATAATGAACAACCAGTTGAATCCAGTATGGAATGAGCACTTTGAATTCATTATTGAAGATGCGTCAACGCAGCACTTGACAGTAAGAATTTTCGATGATGAAGGCGTTCAGGCTTCTGAACTTATTGGCTGTGCCCAAGTTTCCTTGAAGGATCTTGAACCTGGTAAAGTCAAGGACGTATGGCTTAAGCTGGTTAAGGATTTGGAGGTCCATAGAGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTCTTATACTGCCCATTTGGAGTCGAAAGTGCCATTAGAAACCCTTTTGACCCTGATTTCTCATTAACCACGTTCGAGAAGACCCTCAAGAGTGGAACGGGTGACGCAGAGGCTGAAGATCTTATAGGGTCACGTAGGAGAAACAACGTGATTGTAAGAGGGGTTCTATCTGTGACAGTGATTTCAGCTGAAGATTTGCCAGCAGTGGACTTAATGGGCAAGGCTGATCCATTTGTTGTCCTTCTGTTGAAAAAAACAGAAAAAAAACTCAAGACCAGAGTTGTAAATGAATCCCTAAACCCTGTTTGGAATCAAACATTTGATTTTGTTGTGGAGGATGGCTTACACGAAATGTTAATTCTTGAAGTCTACGATCATGATACGTTTGGCAAGGAAAAAATTGGAAGAGTGATCTTGACACTGACTAAGGTCATCTTAGAAGGGGAATACAATGAAACTTATCCTCTAGATGGAGCAAAATCGGGAAATATTTCTTTGCATTTGAAGTGGACTCCACAGCACAAGTTTCGGGATCCTTAG
Predicted protein sequences of Glyma06g07030
>Glyma06g07030.1   sequence type=predicted peptide   gene model=Glyma06g07030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFISGMIVGIAIGIVLIVAFARQGSVRSKRRSDLAKTIAQFARMTVEDSRKILPPKFYPSWVLSWLNSQVEKIWPFVNEAASELIRTNVEPILEQYRPIILSSLTFSKLTLGTVAPQFTGVTIVEENSGPEGVTMDLEMQWDGNPNIVLDIKTRVGVVLPVQVKNIGFTGVFRLIFKPLVDEFPAFGAVCFSLKEKKDLDFTLKVIGGDLSTLPGISDAIEETIRDAIEDSITWPVRKVIPILPGDYSNLELKPVGKLEVKLVQAKNLTNKDIVGKSDPYAVIFVRPLRDRTKTSKIMNNQLNPVWNEHFEFIIEDASTQHLTVRIFDDEGVQASELIGCAQVSLKDLEPGKVKDVWLKLVKDLEVHRDNKYRGEVHLELLYCPFGVESAIRNPFDPDFSLTTFEKTLKSGTGDAEAEDLIGSRRRNNVIVRGVLSVTVISAEDLPAVDLMGKADPFVVLLLKKTEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLILEVYDHDTFGKEKIGRVILTLTKVILEGEYNETYPLDGAKSGNISLHLKWTPQHKFRDP*






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