Glyma06g07010 - SoyBase

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Report for Sequence Feature Glyma06g07010

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5063126
stop:	5069056
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g07010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32140	AT	Annotation by Michelle Graham. TAIR10: EamA-like transporter family \| chr4:15523037-15525195 REVERSE LENGTH=394	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2765	KOG	Predicted membrane protein	JGI		ISS
PTHR23051	Panther	SOLUTE CARRIER FAMILY 35, MEMBER F5	JGI		ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_I1K8S9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8S9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O49378	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT4g32140/F10N7_50 n=1 Tax=Arabidopsis thaliana RepID=O49378_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g07010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g07010

Paralog	Evidence	Comments
Glyma04g06930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g07010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g066500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g07010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g07010

Limit To All Plant Sequences

>Glyma06g07010.1   sequence type=CDS   gene model=Glyma06g07010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGGAGATACAACGCTGGATTGTTCCTCATAGTCACTGTTGTTATTATTTGGGTCACCTCCGCCGAAGTTACCCAGGATATTTTTACAGATTATAAGCAGCCATTTGCAGTAACATATCTTGGAGCTTCTCTTATGGTAGTTTACCTCCCAATAGCATTCATTAAGGACTGGTTCTGTAACTTGCTTAAATCCCGCTCCTCTAAAAGTGGTAAAAATGCAGAATGCGTGGATGAGTTTTCTGTCAGGATTAGCTCTCCTCTCAAAAGCAATGGAGTGCAGAAAAACTTTGAACTGGAATTGGGGAGTGTGAATCGAAAAGATAGTGATTTAGACCTTTCAACACTTGCAGAAGTAAAGCCATTAGTAGCTAAATATAATGATAATACTAATGTGCTAAAGGTGGAGAGACAACTTAATGGGAAGGAAATTGCTGCTTATGGATTTTACATTGCACCTATCTGGTTTATAACAGAGTATCTATCAAATGCAGCCCTTGCACGAACAAGTGTTGCAAGTACAACAGTATTATCATCAACTTCAGGACTTTTCACTCTTTTCATTGGTGCATTTATGGGTCAAGACTCTTTAAATGTAGCAAAAGTAGTTGCTGTCTTAGTCAGCATGGCTGGGGTTGTCATGACAACGCTGGGGAAAACTTGGGCTGCAGATGAATCACAATTAAGTGATGCTGGAAAGCACTCTTTAGTTGGAGATCTTTTTGGAATTCTCTCAGCTATGTCATACGGTCTATTTACAGTTCTTCTTAAGAAGTTTTCTGGTGAAGAAGGAGAAAGGGTTGATGTGCAAAAGCTGTTTGGGTATATTGGATTGTTTACACTTGTAGCACTCTGGTGGCTCGTCTGGCCATTGATGGCCTTAGGAATTGAACCCAAATTTACCATTCCCCACTCTGCTAAAGTGGATGAAGTGGTTCTTGCAAATGGATTTATTGGAAGCGTACTTTCAGACTACTTCTGGGCACTTTGCGTTGTATGGACTACTCCTCTTGTGGCCACTTTGGGCATGTCACTCACCATTCCTCTTGCTATGGTGGCTGACATGGTAATTCATGGTCGGCATTATTCGGCAGTATACATTCTTGGCTCAGTTCAGGTATTTGCAGGCTTTGTAATAGCTAATCTTTCAGATCGGTTGACGAAGATGTTGGGATTGTAG

Predicted protein sequences of Glyma06g07010

Limit To All Plant Sequences

>Glyma06g07010.1   sequence type=predicted peptide   gene model=Glyma06g07010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGWRYNAGLFLIVTVVIIWVTSAEVTQDIFTDYKQPFAVTYLGASLMVVYLPIAFIKDWFCNLLKSRSSKSGKNAECVDEFSVRISSPLKSNGVQKNFELELGSVNRKDSDLDLSTLAEVKPLVAKYNDNTNVLKVERQLNGKEIAAYGFYIAPIWFITEYLSNAALARTSVASTTVLSSTSGLFTLFIGAFMGQDSLNVAKVVAVLVSMAGVVMTTLGKTWAADESQLSDAGKHSLVGDLFGILSAMSYGLFTVLLKKFSGEEGERVDVQKLFGYIGLFTLVALWWLVWPLMALGIEPKFTIPHSAKVDEVVLANGFIGSVLSDYFWALCVVWTTPLVATLGMSLTIPLAMVADMVIHGRHYSAVYILGSVQVFAGFVIANLSDRLTKMLGL*

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