Report for Sequence Feature Glyma06g07000
Feature Type: gene_model
Chromosome: Gm06
Start: 5059113
stop: 5062264
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g07000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G25310 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF2012) | chr2:10777436-10779123 REVERSE LENGTH=210
SoyBase E_val: 1.00E-91 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0030246 GO-mf
Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding
SoyBase N/A ISS
KOG3306
KOG
Predicted membrane protein
JGI ISS
PTHR13605 Panther
UNCHARACTERIZED
JGI ISS
PF09430 PFAM
Protein of unknown function (DUF2012)
JGI ISS
UniRef100_I1K8S5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8S5_SOYBN
SoyBase E_val: 3.00E-151 ISS
UniRef100_Q8VY97 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: ER membrane protein complex subunit 7 homolog n=1 Tax=Arabidopsis thaliana RepID=Y4213_ARATH
SoyBase E_val: 2.00E-81 ISS
Expression Patterns of Glyma06g07000
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g07000
Paralog Evidence Comments
Glyma04g06920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g07000 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g066400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g07000
Transcripts of Glyma06g07000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g07000.2 sequence type=transcript gene model=Glyma06g07000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTCGATAGTTGTGAGTTGTTGTGACTGGTGATGGTACATGGGTGTGGGAACAAAAGATTATATTCTTCCTGGAAAAATTTCAAATGTCAAAGTCATACTCAATGGTGGTCAAAGAGTTACTTTTCTGAGGCCTGATGGATATTTCGCATTCCACAATGTTCCTGCCGGGACACATCTAATTGAAGTGGCTGCAATAGGCTATTTCTTTTCTCCGGTACGAGTTGATGTAAGTGCCAGACACCATGGCAAAATTCAGGCAGCACTGACAGAAAATAGGAGGGGACTTAGTGAGTTTGTCTTGGAGCCATTGAAGGATGAACAATATTATGAGGTTAGGGAGCCATTCTCTATTATGTCCATTGTGAAAAGTCCAATGGGTCTGATGATGGGATTTATGCTGATTGTTGTCTTCCTCATGCCCAAATTAATGGAGAACATGGATCCAGAAGAAATGAGGCGTGCACAAGAAGAAATGAGAAATCAAGGAGTTCCATCTTTAGCAAGCCTGTTACCTGGTGCTGCAAGAAGCAACTAGGTGTATGAGTAACGGAAAACCAGTGAGCAAGTTGGTTACCCCCAAGCAGGAGCTGAAAAAATGACATACGATGATTGGAGAATTTTCTTGTGACAAATTGATAGCGATGGAAATCTTTCGATTATTTATGTAGTGAATTAGTAAAAATTTGAAATTTCTGATAGAGGTTTATATGTTTGATTTGAACAGTCGGGAGTAGGTTTCTACGTAATTCTTGTTCACTTTCTCGTCAATGTTGATAACCATGCACTGATGGATGATTTTTTTTTTTTTGGTTTACTTATAGAAACTGTTAATTTCCACTTTTGGTCCTTTTGCTTGAAAAAGGAATTGATTTATGATCTGTTTTGGCCGCATTGCTCTAGTTAATATAAATGTGTAAATTATATAACAT
Coding sequences of Glyma06g07000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g07000.1 sequence type=CDS gene model=Glyma06g07000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCTCAACCAGATCACTCATTCTTTGTCTGTTCATTCAACTGTGCTTCTACCTTCTACCCCTCTCATTCGCTCAATCCCCCGCCACCGGGTCTGCCGAAGGTTACACCATTTATGGTCGAGTGAAGATCCCCAGTGTGGGAACAAAAGATTATATTCTTCCTGGAAAAATTTCAAATGTCAAAGTCATACTCAATGGTGGTCAAAGAGTTACTTTTCTGAGGCCTGATGGATATTTCGCATTCCACAATGTTCCTGCCGGGACACATCTAATTGAAGTGGCTGCAATAGGCTATTTCTTTTCTCCGGTACGAGTTGATGTAAGTGCCAGACACCATGGCAAAATTCAGGCAGCACTGACAGAAAATAGGAGGGGACTTAGTGAGTTTGTCTTGGAGCCATTGAAGGATGAACAATATTATGAGGTTAGGGAGCCATTCTCTATTATGTCCATTGTGAAAAGTCCAATGGGTCTGATGATGGGATTTATGCTGATTGTTGTCTTCCTCATGCCCAAATTAATGGAGAACATGGATCCAGAAGAAATGAGGCGTGCACAAGAAGAAATGAGAAATCAAGGAGTTCCATCTTTAGCAAGCCTGTTACCTGGTGCTGCAAGAAGCAACTAG
>Glyma06g07000.2 sequence type=CDS gene model=Glyma06g07000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGTGGGAACAAAAGATTATATTCTTCCTGGAAAAATTTCAAATGTCAAAGTCATACTCAATGGTGGTCAAAGAGTTACTTTTCTGAGGCCTGATGGATATTTCGCATTCCACAATGTTCCTGCCGGGACACATCTAATTGAAGTGGCTGCAATAGGCTATTTCTTTTCTCCGGTACGAGTTGATGTAAGTGCCAGACACCATGGCAAAATTCAGGCAGCACTGACAGAAAATAGGAGGGGACTTAGTGAGTTTGTCTTGGAGCCATTGAAGGATGAACAATATTATGAGGTTAGGGAGCCATTCTCTATTATGTCCATTGTGAAAAGTCCAATGGGTCTGATGATGGGATTTATGCTGATTGTTGTCTTCCTCATGCCCAAATTAATGGAGAACATGGATCCAGAAGAAATGAGGCGTGCACAAGAAGAAATGAGAAATCAAGGAGTTCCATCTTTAGCAAGCCTGTTACCTGGTGCTGCAAGAAGCAACTAG
Predicted protein sequences of Glyma06g07000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g07000.1 sequence type=predicted peptide gene model=Glyma06g07000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASTRSLILCLFIQLCFYLLPLSFAQSPATGSAEGYTIYGRVKIPSVGTKDYILPGKISNVKVILNGGQRVTFLRPDGYFAFHNVPAGTHLIEVAAIGYFFSPVRVDVSARHHGKIQAALTENRRGLSEFVLEPLKDEQYYEVREPFSIMSIVKSPMGLMMGFMLIVVFLMPKLMENMDPEEMRRAQEEMRNQGVPSLASLLPGAARSN*
>Glyma06g07000.2 sequence type=predicted peptide gene model=Glyma06g07000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGVGTKDYILPGKISNVKVILNGGQRVTFLRPDGYFAFHNVPAGTHLIEVAAIGYFFSPVRVDVSARHHGKIQAALTENRRGLSEFVLEPLKDEQYYEVREPFSIMSIVKSPMGLMMGFMLIVVFLMPKLMENMDPEEMRRAQEEMRNQGVPSLASLLPGAARSN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
