Glyma06g06960 - SoyBase

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Report for Sequence Feature Glyma06g06960

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5034087
stop:	5038466
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g06960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32060	AT	Annotation by Michelle Graham. TAIR10: calcium-binding EF hand family protein \| chr4:15501134-15503321 FORWARD LENGTH=498	SoyBase	E_val: 0	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG2643	KOG	Ca2+ binding protein, contains EF-hand motifs	JGI		ISS
PTHR12294	Panther	EF HAND DOMAIN FAMILY A1,A2-RELATED	JGI		ISS
PTHR12294:SF1	Panther	gb def: cg4704 gene product [drosophila melanogaster]	JGI		ISS
PF00036	PFAM	EF hand	JGI		ISS
UniRef100_B9RP01	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9RP01_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339FFC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339FFC related cluster n=1 Tax=unknown RepID=UPI0002339FFC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g06960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g06960

Paralog	Evidence	Comments
Glyma04g06880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g06960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g066000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g06960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g06960

Limit To All Plant Sequences

>Glyma06g06960.2   sequence type=CDS   gene model=Glyma06g06960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCCTTTTCCACTCTCCGGAGATTCTCACTTTTCACCCAACAACGCTTCCGTAACCTTCACTCCTCTTCCATTTCCCAATCCTCCTCCTCCTCCTCTTCCAACCCACATAGTAATCCCAAGTGGGGTTCAGCCATTGTCGTAGCCTCTGCTCTTGCCCTTTTCTATTGCTTCAACACACCCAATTCACACTTCGAATTCTCAAACAATGCTCCTCGCAGTTCTTCACCGCCATTGTTTGAAAAATCATCCCTTCCTGAAAGCACACATGATCACTTGCTTTTTGGAGATGCCTACAGAAGCAAAGTTTTCTTCAACTATGAGAAGCGCCTACGGTTGCATAGTCCACCCGAAAAGGTTTTTGAATACTTTGCATCTTGTCGTACTCTAGAAGGAGAACTACTGATGAAGCCAGTGGACCTAATGCGAGCAGTTGTTCCTGTTTTCCCTCCTTCAGAATCCAACCTTGTAAGAGAGGGATACTTGAAAGGTGAAAGAAATCCTGGCCATTTATTCTGTCCCCCTTCGGAGTTTTTTATGCTTTTTGATGTAGACAACGATGGGCTTATATCTTTCAAAGAGTATATCTTTTTTGTAACTCTACTAAGCATCCAAGAATCAAGCTTTTCTGCAGCATTTAAAATGTTTGACAAGGATAATGACGGGGAGATAGATAAGGAAGAATTCAAGAAAGTGATGCAATCAATGCGATCTCATACCAGACAAGGTGTTCAACACGGGGATGGACGACGAACTGGCCTAAAGGCCAATGCTTCTGTAGAAAATGGAGGGCTGGTGGAATACTTATTTGGTAAAGATGGAAAGGGACGCCTCAAACATGATAAATTCGTGCAGTTTATAAGAGACTTGCATGATGAAATTGTAGGGCTGGAGTTTGCTCATTATGATTACAAATCTCGAAAAACTATATCGGCCAAGGACTTTGCACACTCCATTGTTGCTTCTGCTGACTTGAGTCATCTGGGCAGGTTGCTTGAACGGGTTGATGAATTGAGCAATGATCCACGGTTTAAGGATGTATGCATAACATTTGAGGAGTTCAAAAATTTTGCAGAGCTGCGGAAAAAATTATTACCATTTTCATTGGCCATTTTCAGTTTTGCAGAAGTGCAAGGCCTGTTAACAAGAGATGATTTTCAGCGAGCTGCATCACATGTTTGTGGCGTATCTCTCTCAGACAACGTGGTTGAGATTGTTTTCCATTTGTTTGACGCAAATGAGGATGGAAATCTGAGTACGGAGGAGTTTGTTAGTGTGCTACAACATCGAGAAAGAGACATTGCTCAACCTGTGGAGACAGGAATCATGGGTTTCTTGTCATGCTGCTGGAAATGTACGGACACCTCTCCATCTTCTCGGTTGTTTTCCTGA

Predicted protein sequences of Glyma06g06960

Limit To All Plant Sequences

>Glyma06g06960.2   sequence type=predicted peptide   gene model=Glyma06g06960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSFSTLRRFSLFTQQRFRNLHSSSISQSSSSSSSNPHSNPKWGSAIVVASALALFYCFNTPNSHFEFSNNAPRSSSPPLFEKSSLPESTHDHLLFGDAYRSKVFFNYEKRLRLHSPPEKVFEYFASCRTLEGELLMKPVDLMRAVVPVFPPSESNLVREGYLKGERNPGHLFCPPSEFFMLFDVDNDGLISFKEYIFFVTLLSIQESSFSAAFKMFDKDNDGEIDKEEFKKVMQSMRSHTRQGVQHGDGRRTGLKANASVENGGLVEYLFGKDGKGRLKHDKFVQFIRDLHDEIVGLEFAHYDYKSRKTISAKDFAHSIVASADLSHLGRLLERVDELSNDPRFKDVCITFEEFKNFAELRKKLLPFSLAIFSFAEVQGLLTRDDFQRAASHVCGVSLSDNVVEIVFHLFDANEDGNLSTEEFVSVLQHRERDIAQPVETGIMGFLSCCWKCTDTSPSSRLFS*

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