SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G25270 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:10759779-10762358 FORWARD LENGTH=545 | SoyBase | E_val: 0 | ISS |
| GO:0031507 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heterochromatin assembly | SoyBase | N/A | ISS |
| GO:0045787 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| UniRef100_I1K8S0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8S0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q25A63 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: H0306F03.12 protein n=3 Tax=Oryza sativa RepID=Q25A63_ORYSA | SoyBase | E_val: 2.00E-166 | ISS |
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Glyma06g06940 not represented in the dataset |
Glyma06g06940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g06850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g065800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g06940.1 sequence type=CDS gene model=Glyma06g06940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGTTAAATTACAGACCACTTCATTTTGTTTTCCTGCTCACATTTTTCTTGTCCGCTTCCTGTCTCTTGTCACACCAGGCTTCAGGGACAGAAAACGAGGGAAAAAACGTTGTTGGCCTTTCTCGGTTGTATGTATTTGCTGCTGCACCGTTCGAGAGCTCGCCCTTTCCCTTAGCTGCTGAGAGAACACGAAGAAAAGACCCTCTTGATGGCTTCAATAAGTACATTTATGGATGGAATATCACTAGCAGTGATTATTGGGCTTCTGTGGCATATACCGCAGCTCCTTTGTTCAGTATTGCAGCAGTCTGGTTCTTGGGCTTTGGCTTATGCTTAGTGATCATCGGTGTTTGTTACTTCTGTCATAAAAGAGAGCCATATGGTTATTCACCAACATGCTATGCCCTTTCCCTTATTCTCCTGATATTATTCACATTTACAGCATTGATTGGATGTGCAGTTCTCTACATTGGCCAAGGAAGTTTTCATCATAGCATGACACATACATTGCAGTATGTGGTACATCAAGCTGATTCTACTGTGGATAAGCTTAGGAACGTGTCAGATTATCTTGCTCAAGCTAAGCAGGTTGGAATCGATCGAGTTTTTCTCCCCACAAATGTTCAAACTGATATTGATCAAGCAGAAACAGATATCAATAACTCTGCTAGCACCCTTGCTGATAAGACAAAGGAGAACTCAGACAACATACAAGATCTCTTAGATTCTGCGAGGCTAGCACTTATCATAATAGCTGCTGTCATGCTAGTCTTGACATTTCTTGGATTTTTATTCTCGATTTTTGGCATACAGCTCCTTGTGTACATCTTGGTAATCGCAGGATGGGTTCTTGTTACTGGCACCCTTATATTATGTGGCCTGTTCCTTGTTCTCCATAATGCGACAGCAGACAGTTGTATAGCTGTGAATGAGTGGATCCAGTATCCGACTGCACATACGGCTATGGACGATATTCTGCCCTGTGTGGACAATGCCACTGCACAAGAAACATTGTCACGAAGCAAAGAAGTAACTTCTGAACTAGTCAATTTGGTCAACCAAGTTATCACCAATGTCTCCAACTTAAATTTTGCCCCCAATTTCACTCCACTCTACTACAATCAATCTGGTCCCCTCATGCCACTCCTCTGTAATCCCTTCCATCCTGACATGACGGATAGACAATGTGATGCTGGTGAAGTCACCCTAAGCAATGCAACACAGGTGTATGGCAATTTTGTGTGCCAGGTTTCACCATCTGAGATATGCATGACACAGGGGCGTTTGACCCCTACCTTCTACAACCAAATATCTGCTGGAATAAACGTGGGCAACGCCTTGTATGATTATGCTCCGTCCCTCATTGAGCTACAAGATTGCACCTTCGTTCGAGAAACTCTAAGCGACATATCCAGGGACCATTGTCCTGGTTTACAGCGTTATAGTAGATGGATCTATATTGGATTGGTAATGGTCTCTTTTGCCGTCATGTTCTCATTGATCTTCTGGATCGTGTATGGGAGAGAGAGGAGACATCGTCTATATAGAAAAGAGTCAAAGGACTTCACTCCTACACATGCACCAGCACCAGCACCAGGACAAGCATTAGCATTGGCCCAGATCCCTGAAGGATAA
>Glyma06g06940.1 sequence type=predicted peptide gene model=Glyma06g06940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLLNYRPLHFVFLLTFFLSASCLLSHQASGTENEGKNVVGLSRLYVFAAAPFESSPFPLAAERTRRKDPLDGFNKYIYGWNITSSDYWASVAYTAAPLFSIAAVWFLGFGLCLVIIGVCYFCHKREPYGYSPTCYALSLILLILFTFTALIGCAVLYIGQGSFHHSMTHTLQYVVHQADSTVDKLRNVSDYLAQAKQVGIDRVFLPTNVQTDIDQAETDINNSASTLADKTKENSDNIQDLLDSARLALIIIAAVMLVLTFLGFLFSIFGIQLLVYILVIAGWVLVTGTLILCGLFLVLHNATADSCIAVNEWIQYPTAHTAMDDILPCVDNATAQETLSRSKEVTSELVNLVNQVITNVSNLNFAPNFTPLYYNQSGPLMPLLCNPFHPDMTDRQCDAGEVTLSNATQVYGNFVCQVSPSEICMTQGRLTPTFYNQISAGINVGNALYDYAPSLIELQDCTFVRETLSDISRDHCPGLQRYSRWIYIGLVMVSFAVMFSLIFWIVYGRERRHRLYRKESKDFTPTHAPAPAPGQALALAQIPEG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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