Glyma06g06930 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g06930

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5001898
stop:	5004966
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g06930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25250	AT	Annotation by Michelle Graham. TAIR10: SPFH/Band 7/PHB domain-containing membrane-associated protein family \| chr5:8749774-8751430 FORWARD LENGTH=470	SoyBase	E_val: 0	ISS
GO:0006897	GO-bp	Annotation by Michelle Graham. GO Biological Process: endocytosis	SoyBase	N/A	ISS
GO:0010324	GO-bp	Annotation by Michelle Graham. GO Biological Process: membrane invagination	SoyBase	N/A	ISS
GO:0071456	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to hypoxia	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2668	KOG	Flotillins	JGI		ISS
PTHR13806	Panther	FLOTILLIN-RELATED	JGI		ISS
PTHR13806:SF3	Panther	gb def: cog2268:uncharacterized bcr [corynebacterium glutamicum]	JGI		ISS
PF01145	PFAM	SPFH domain / Band 7 family	JGI		ISS
UniRef100_Q9ZTB2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Nodulin n=1 Tax=Glycine max RepID=Q9ZTB2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9ZTB2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nodulin n=1 Tax=Glycine max RepID=Q9ZTB2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g06930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g06930

Paralog	Evidence	Comments
Glyma04g06830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g06930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g065600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g06930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g06930

Limit To All Plant Sequences

>Glyma06g06930.2   sequence type=transcript   gene model=Glyma06g06930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATCTATATCTGTATATCGCGGCTAATTGGTGTAGCTTTTTATCACTGCGGCAGAATTAAGCATAAAGATGTACAAGGTAGCAAACGCCTCAGAATACCTTGTGATCACTGGGGTTGGAATCACAGACATAAAGCTTGCAAAGAAAGCATGGGTTCTCCCAGGCCAGTCATGCACCGTTTTCGACCTCTCTCCGGTGAACTACACCTTCGAGGTTCAGGCCATGAGCGCCGAGAAGCTCCCTTTCATTCTCCCTGCAGTCTTCACCATCGGTCCCAGAGTGGAGGACGAAGACAGCCTTCTCAAATACGCCAGACTCCTCTCCTCCCACGACAAGCTCTCTCACCATGTCAAGGAGCTTGTCCAGGGCATCATCGAGGGTGAGACGCGTGTCCTCGCTGCTTCCATGACCATGGAGGAGATTTTCAGAGGCACCAAATCGTTTAAACAGGAAGTGTTCGAGAAGGTTCAGCTGGAGCTTAACCAGTTCGGCCTTCTGATTTACAACGCCAACGTTAAGCAACTTGTTGACGTGCCAGGTCATGAGTATTTCTCTTACTTGGGCCAGAAGACTCAGATGGAAGCTGCCAACCAAGCCAAAGTTGACGTGGCTGAGGCCAAGATGAAAGGAGAGGTTGGATCGAAGCAGAGACAAGGGCAAACGCTTCAGAATGCTGCCAAGATCGATGCGGAAACTAAGATAATATCGACGCAGAGGCAAGGAGATGGTAAGAAGGAGGAAATAAAGGTGAGGACAGAGGTTAAGGTGTTTGAGAATGAGAGAGAGGCTGTGGTGGCAGAGGCAAATTCCGAGCTTGCAAAGAAAAAAGCTGTGTGGGCTCAAACGGCGCAGGTGGCAGAAGTGGAGGCCGCCAAAGCTGTGGCTCTCAGAGAAGCGGAATTGCAGAGAGAAGTTGAGAGGATGAATGCTCTTACAAGGACTGAGAAGCTTAAAGCTGAGTTCCTCAGCAAAGCAAGTGTTGAGTATGAAACCAAGGTACAAGAGGCAAACTGGGAGTTGTACAAGAAGCAAAAGGCGGCGGAAGCAATATTGTTTGAGAAGGAGAAAGAGGCGGAAGCGCAAAAAGCATTAGCGGAGGCAGCATTTTTCAGTCGGCAACAAGAAGCTGAAGCAGAACTATTTGCAAAGAAAAAGGAGGCAGAAGGGCTTGTGGCACTTGGGCAGGCCCAGGGGGCATATTTAAAGACACTTCTTGGTGCACTGGGAGGCAACTATGGCAACCTAAGGGACTACTTGATGATAAATAGTGGCATGTTTCAAGAGATTGCCAAGACTAATGCCGATGCAATTCGTGGACTTGAGCCAAAGATTAGTATTTGGACTAATGGTGGAGATACAAATGATGGCTATGGAAGTGGTGCCATGAAGGATGTTGCTGGTGTCTACAAGATGTTGCCACCTTTGTTTAAGACAGTTCATGAGCAAACCGGTATGCTGCCACCCGCTTGGATGGGAACCCTGCCCGATAATGGTTCTTGAGCCTCTGCTTATTAATACCTCCACATCATCAAATGTGTGCTGCTCGCTTTTCCTCTTTTTTATTTTGCCGATTGGATGCATGTTTTGTAAATAAGGTTTCTTCAAGCTCAAGCTATCAAGCTTCTGCATTGCTGACAACTTCAGTTATTTACATTCGTTATCTTTCTCAACAAGTATAATTAGTCAACCGTTAATAAAAAGAAGAAAAGAGGTATCATGAGAGTAATAAAGAAATGAATCTCATTTTTCATAACAGAGGAAACTGTGATGACTTATCTACAAAACCCATAAGAAAATAGAAATGCAACAACACTTTAGCACTCAAAATGCAATTTCATCCTCAATTAACTTAAAT

Coding sequences of Glyma06g06930

Limit To All Plant Sequences

>Glyma06g06930.1   sequence type=CDS   gene model=Glyma06g06930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACAAGGTAGCAAACGCCTCAGAATACCTTGTGATCACTGGGGTTGGAATCACAGACATAAAGCTTGCAAAGAAAGCATGGGTTCTCCCAGGCCAGTCATGCACCGTTTTCGACCTCTCTCCGGTGAACTACACCTTCGAGGTTCAGGCCATGAGCGCCGAGAAGCTCCCTTTCATTCTCCCTGCAGTCTTCACCATCGGTCCCAGAGTGGAGGACGAAGACAGCCTTCTCAAATACGCCAGACTCCTCTCCTCCCACGACAAGCTCTCTCACCATGTCAAGGAGCTTGTCCAGGGCATCATCGAGGGTGAGACGCGTGTCCTCGCTGCTTCCATGACCATGGAGGAGATTTTCAGAGGCACCAAATCGTTTAAACAGGAAGTGTTCGAGAAGGTTCAGCTGGAGCTTAACCAGTTCGGCCTTCTGATTTACAACGCCAACGTTAAGCAACTTGTTGACGTGCCAGGTCATGAGTATTTCTCTTACTTGGGCCAGAAGACTCAGATGGAAGCTGCCAACCAAGCCAAAGTTGACGTGGCTGAGGCCAAGATGAAAGGAGAGGTTGGATCGAAGCAGAGACAAGGGCAAACGCTTCAGAATGCTGCCAAGATCGATGCGGAAACTAAGATAATATCGACGCAGAGGCAAGGAGATGGTAAGAAGGAGGAAATAAAGGTGAGGACAGAGGTTAAGGTGTTTGAGAATGAGAGAGAGGCTGTGGTGGCAGAGGCAAATTCCGAGCTTGCAAAGAAAAAAGCTGTGTGGGCTCAAACGGCGCAGGTGGCAGAAGTGGAGGCCGCCAAAGCTGTGGCTCTCAGAGAAGCGGAATTGCAGAGAGAAGTTGAGAGGATGAATGCTCTTACAAGGACTGAGAAGCTTAAAGCTGAGTTCCTCAGCAAAGCAAGTGTTGAGTATGAAACCAAGGTACAAGAGGCAAACTGGGAGTTGTACAAGAAGCAAAAGGCGGCGGAAGCAATATTGTTTGAGAAGGAGAAAGAGGCGGAAGCGCAAAAAGCATTAGCGGAGGCAGCATTTTTCAGTCGGCAACAAGAAGCTGAAGCAGAACTATTTGCAAAGAAAAAGGAGGCAGAAGGGCTTGTGGCACTTGGGCAGGCCCAGGGGGCATATTTAAAGACACTTCTTGGTGCACTGGGAGGCAACTATGGCAACCTAAGGGACTACTTGATGATAAATAGTGGCATGTTTCAAGAGATTGCCAAGACTAATGCCGATGCAATTCGTGGACTTGAGCCAAAGATTAGTATTTGGACTAATGGTGGAGATACAAATGATGGCTATGGAAGTGGTGCCATGAAGGATGTTGCTGGTGTCTACAAGATGTTGCCACCTTTGTTTAAGACAGTTCATGAGCAAACCGGTATGCTGCCACCCGCTTGGATGGGAACCCTGCCCGATAATGGTTCTTGA

>Glyma06g06930.2   sequence type=CDS   gene model=Glyma06g06930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACAAGGTAGCAAACGCCTCAGAATACCTTGTGATCACTGGGGTTGGAATCACAGACATAAAGCTTGCAAAGAAAGCATGGGTTCTCCCAGGCCAGTCATGCACCGTTTTCGACCTCTCTCCGGTGAACTACACCTTCGAGGTTCAGGCCATGAGCGCCGAGAAGCTCCCTTTCATTCTCCCTGCAGTCTTCACCATCGGTCCCAGAGTGGAGGACGAAGACAGCCTTCTCAAATACGCCAGACTCCTCTCCTCCCACGACAAGCTCTCTCACCATGTCAAGGAGCTTGTCCAGGGCATCATCGAGGGTGAGACGCGTGTCCTCGCTGCTTCCATGACCATGGAGGAGATTTTCAGAGGCACCAAATCGTTTAAACAGGAAGTGTTCGAGAAGGTTCAGCTGGAGCTTAACCAGTTCGGCCTTCTGATTTACAACGCCAACGTTAAGCAACTTGTTGACGTGCCAGGTCATGAGTATTTCTCTTACTTGGGCCAGAAGACTCAGATGGAAGCTGCCAACCAAGCCAAAGTTGACGTGGCTGAGGCCAAGATGAAAGGAGAGGTTGGATCGAAGCAGAGACAAGGGCAAACGCTTCAGAATGCTGCCAAGATCGATGCGGAAACTAAGATAATATCGACGCAGAGGCAAGGAGATGGTAAGAAGGAGGAAATAAAGGTGAGGACAGAGGTTAAGGTGTTTGAGAATGAGAGAGAGGCTGTGGTGGCAGAGGCAAATTCCGAGCTTGCAAAGAAAAAAGCTGTGTGGGCTCAAACGGCGCAGGTGGCAGAAGTGGAGGCCGCCAAAGCTGTGGCTCTCAGAGAAGCGGAATTGCAGAGAGAAGTTGAGAGGATGAATGCTCTTACAAGGACTGAGAAGCTTAAAGCTGAGTTCCTCAGCAAAGCAAGTGTTGAGTATGAAACCAAGGTACAAGAGGCAAACTGGGAGTTGTACAAGAAGCAAAAGGCGGCGGAAGCAATATTGTTTGAGAAGGAGAAAGAGGCGGAAGCGCAAAAAGCATTAGCGGAGGCAGCATTTTTCAGTCGGCAACAAGAAGCTGAAGCAGAACTATTTGCAAAGAAAAAGGAGGCAGAAGGGCTTGTGGCACTTGGGCAGGCCCAGGGGGCATATTTAAAGACACTTCTTGGTGCACTGGGAGGCAACTATGGCAACCTAAGGGACTACTTGATGATAAATAGTGGCATGTTTCAAGAGATTGCCAAGACTAATGCCGATGCAATTCGTGGACTTGAGCCAAAGATTAGTATTTGGACTAATGGTGGAGATACAAATGATGGCTATGGAAGTGGTGCCATGAAGGATGTTGCTGGTGTCTACAAGATGTTGCCACCTTTGTTTAAGACAGTTCATGAGCAAACCGGTATGCTGCCACCCGCTTGGATGGGAACCCTGCCCGATAATGGTTCTTGA

Predicted protein sequences of Glyma06g06930

Limit To All Plant Sequences

>Glyma06g06930.1   sequence type=predicted peptide   gene model=Glyma06g06930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYKVANASEYLVITGVGITDIKLAKKAWVLPGQSCTVFDLSPVNYTFEVQAMSAEKLPFILPAVFTIGPRVEDEDSLLKYARLLSSHDKLSHHVKELVQGIIEGETRVLAASMTMEEIFRGTKSFKQEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEAKMKGEVGSKQRQGQTLQNAAKIDAETKIISTQRQGDGKKEEIKVRTEVKVFENEREAVVAEANSELAKKKAVWAQTAQVAEVEAAKAVALREAELQREVERMNALTRTEKLKAEFLSKASVEYETKVQEANWELYKKQKAAEAILFEKEKEAEAQKALAEAAFFSRQQEAEAELFAKKKEAEGLVALGQAQGAYLKTLLGALGGNYGNLRDYLMINSGMFQEIAKTNADAIRGLEPKISIWTNGGDTNDGYGSGAMKDVAGVYKMLPPLFKTVHEQTGMLPPAWMGTLPDNGS*

>Glyma06g06930.2   sequence type=predicted peptide   gene model=Glyma06g06930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYKVANASEYLVITGVGITDIKLAKKAWVLPGQSCTVFDLSPVNYTFEVQAMSAEKLPFILPAVFTIGPRVEDEDSLLKYARLLSSHDKLSHHVKELVQGIIEGETRVLAASMTMEEIFRGTKSFKQEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEAKMKGEVGSKQRQGQTLQNAAKIDAETKIISTQRQGDGKKEEIKVRTEVKVFENEREAVVAEANSELAKKKAVWAQTAQVAEVEAAKAVALREAELQREVERMNALTRTEKLKAEFLSKASVEYETKVQEANWELYKKQKAAEAILFEKEKEAEAQKALAEAAFFSRQQEAEAELFAKKKEAEGLVALGQAQGAYLKTLLGALGGNYGNLRDYLMINSGMFQEIAKTNADAIRGLEPKISIWTNGGDTNDGYGSGAMKDVAGVYKMLPPLFKTVHEQTGMLPPAWMGTLPDNGS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain