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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G25250 | AT | Annotation by Michelle Graham. TAIR10: SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:8749774-8751430 FORWARD LENGTH=470 | SoyBase | E_val: 0 | ISS |
| GO:0006897 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endocytosis | SoyBase | N/A | ISS |
| GO:0010324 | GO-bp | Annotation by Michelle Graham. GO Biological Process: membrane invagination | SoyBase | N/A | ISS |
| GO:0071456 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to hypoxia | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2668 | KOG | Flotillins | JGI | ISS | |
| PTHR13806 | Panther | FLOTILLIN-RELATED | JGI | ISS | |
| PTHR13806:SF3 | Panther | gb def: cog2268:uncharacterized bcr [corynebacterium glutamicum] | JGI | ISS | |
| PF01145 | PFAM | SPFH domain / Band 7 family | JGI | ISS | |
| UniRef100_Q9ZTB2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Nodulin n=1 Tax=Glycine max RepID=Q9ZTB2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9ZTB2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nodulin n=1 Tax=Glycine max RepID=Q9ZTB2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g06930 not represented in the dataset |
Glyma06g06930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g06830 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g065600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g06930.2 sequence type=transcript gene model=Glyma06g06930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATATCTATATCTGTATATCGCGGCTAATTGGTGTAGCTTTTTATCACTGCGGCAGAATTAAGCATAAAGATGTACAAGGTAGCAAACGCCTCAGAATACCTTGTGATCACTGGGGTTGGAATCACAGACATAAAGCTTGCAAAGAAAGCATGGGTTCTCCCAGGCCAGTCATGCACCGTTTTCGACCTCTCTCCGGTGAACTACACCTTCGAGGTTCAGGCCATGAGCGCCGAGAAGCTCCCTTTCATTCTCCCTGCAGTCTTCACCATCGGTCCCAGAGTGGAGGACGAAGACAGCCTTCTCAAATACGCCAGACTCCTCTCCTCCCACGACAAGCTCTCTCACCATGTCAAGGAGCTTGTCCAGGGCATCATCGAGGGTGAGACGCGTGTCCTCGCTGCTTCCATGACCATGGAGGAGATTTTCAGAGGCACCAAATCGTTTAAACAGGAAGTGTTCGAGAAGGTTCAGCTGGAGCTTAACCAGTTCGGCCTTCTGATTTACAACGCCAACGTTAAGCAACTTGTTGACGTGCCAGGTCATGAGTATTTCTCTTACTTGGGCCAGAAGACTCAGATGGAAGCTGCCAACCAAGCCAAAGTTGACGTGGCTGAGGCCAAGATGAAAGGAGAGGTTGGATCGAAGCAGAGACAAGGGCAAACGCTTCAGAATGCTGCCAAGATCGATGCGGAAACTAAGATAATATCGACGCAGAGGCAAGGAGATGGTAAGAAGGAGGAAATAAAGGTGAGGACAGAGGTTAAGGTGTTTGAGAATGAGAGAGAGGCTGTGGTGGCAGAGGCAAATTCCGAGCTTGCAAAGAAAAAAGCTGTGTGGGCTCAAACGGCGCAGGTGGCAGAAGTGGAGGCCGCCAAAGCTGTGGCTCTCAGAGAAGCGGAATTGCAGAGAGAAGTTGAGAGGATGAATGCTCTTACAAGGACTGAGAAGCTTAAAGCTGAGTTCCTCAGCAAAGCAAGTGTTGAGTATGAAACCAAGGTACAAGAGGCAAACTGGGAGTTGTACAAGAAGCAAAAGGCGGCGGAAGCAATATTGTTTGAGAAGGAGAAAGAGGCGGAAGCGCAAAAAGCATTAGCGGAGGCAGCATTTTTCAGTCGGCAACAAGAAGCTGAAGCAGAACTATTTGCAAAGAAAAAGGAGGCAGAAGGGCTTGTGGCACTTGGGCAGGCCCAGGGGGCATATTTAAAGACACTTCTTGGTGCACTGGGAGGCAACTATGGCAACCTAAGGGACTACTTGATGATAAATAGTGGCATGTTTCAAGAGATTGCCAAGACTAATGCCGATGCAATTCGTGGACTTGAGCCAAAGATTAGTATTTGGACTAATGGTGGAGATACAAATGATGGCTATGGAAGTGGTGCCATGAAGGATGTTGCTGGTGTCTACAAGATGTTGCCACCTTTGTTTAAGACAGTTCATGAGCAAACCGGTATGCTGCCACCCGCTTGGATGGGAACCCTGCCCGATAATGGTTCTTGAGCCTCTGCTTATTAATACCTCCACATCATCAAATGTGTGCTGCTCGCTTTTCCTCTTTTTTATTTTGCCGATTGGATGCATGTTTTGTAAATAAGGTTTCTTCAAGCTCAAGCTATCAAGCTTCTGCATTGCTGACAACTTCAGTTATTTACATTCGTTATCTTTCTCAACAAGTATAATTAGTCAACCGTTAATAAAAAGAAGAAAAGAGGTATCATGAGAGTAATAAAGAAATGAATCTCATTTTTCATAACAGAGGAAACTGTGATGACTTATCTACAAAACCCATAAGAAAATAGAAATGCAACAACACTTTAGCACTCAAAATGCAATTTCATCCTCAATTAACTTAAAT
>Glyma06g06930.1 sequence type=CDS gene model=Glyma06g06930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACAAGGTAGCAAACGCCTCAGAATACCTTGTGATCACTGGGGTTGGAATCACAGACATAAAGCTTGCAAAGAAAGCATGGGTTCTCCCAGGCCAGTCATGCACCGTTTTCGACCTCTCTCCGGTGAACTACACCTTCGAGGTTCAGGCCATGAGCGCCGAGAAGCTCCCTTTCATTCTCCCTGCAGTCTTCACCATCGGTCCCAGAGTGGAGGACGAAGACAGCCTTCTCAAATACGCCAGACTCCTCTCCTCCCACGACAAGCTCTCTCACCATGTCAAGGAGCTTGTCCAGGGCATCATCGAGGGTGAGACGCGTGTCCTCGCTGCTTCCATGACCATGGAGGAGATTTTCAGAGGCACCAAATCGTTTAAACAGGAAGTGTTCGAGAAGGTTCAGCTGGAGCTTAACCAGTTCGGCCTTCTGATTTACAACGCCAACGTTAAGCAACTTGTTGACGTGCCAGGTCATGAGTATTTCTCTTACTTGGGCCAGAAGACTCAGATGGAAGCTGCCAACCAAGCCAAAGTTGACGTGGCTGAGGCCAAGATGAAAGGAGAGGTTGGATCGAAGCAGAGACAAGGGCAAACGCTTCAGAATGCTGCCAAGATCGATGCGGAAACTAAGATAATATCGACGCAGAGGCAAGGAGATGGTAAGAAGGAGGAAATAAAGGTGAGGACAGAGGTTAAGGTGTTTGAGAATGAGAGAGAGGCTGTGGTGGCAGAGGCAAATTCCGAGCTTGCAAAGAAAAAAGCTGTGTGGGCTCAAACGGCGCAGGTGGCAGAAGTGGAGGCCGCCAAAGCTGTGGCTCTCAGAGAAGCGGAATTGCAGAGAGAAGTTGAGAGGATGAATGCTCTTACAAGGACTGAGAAGCTTAAAGCTGAGTTCCTCAGCAAAGCAAGTGTTGAGTATGAAACCAAGGTACAAGAGGCAAACTGGGAGTTGTACAAGAAGCAAAAGGCGGCGGAAGCAATATTGTTTGAGAAGGAGAAAGAGGCGGAAGCGCAAAAAGCATTAGCGGAGGCAGCATTTTTCAGTCGGCAACAAGAAGCTGAAGCAGAACTATTTGCAAAGAAAAAGGAGGCAGAAGGGCTTGTGGCACTTGGGCAGGCCCAGGGGGCATATTTAAAGACACTTCTTGGTGCACTGGGAGGCAACTATGGCAACCTAAGGGACTACTTGATGATAAATAGTGGCATGTTTCAAGAGATTGCCAAGACTAATGCCGATGCAATTCGTGGACTTGAGCCAAAGATTAGTATTTGGACTAATGGTGGAGATACAAATGATGGCTATGGAAGTGGTGCCATGAAGGATGTTGCTGGTGTCTACAAGATGTTGCCACCTTTGTTTAAGACAGTTCATGAGCAAACCGGTATGCTGCCACCCGCTTGGATGGGAACCCTGCCCGATAATGGTTCTTGA >Glyma06g06930.2 sequence type=CDS gene model=Glyma06g06930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACAAGGTAGCAAACGCCTCAGAATACCTTGTGATCACTGGGGTTGGAATCACAGACATAAAGCTTGCAAAGAAAGCATGGGTTCTCCCAGGCCAGTCATGCACCGTTTTCGACCTCTCTCCGGTGAACTACACCTTCGAGGTTCAGGCCATGAGCGCCGAGAAGCTCCCTTTCATTCTCCCTGCAGTCTTCACCATCGGTCCCAGAGTGGAGGACGAAGACAGCCTTCTCAAATACGCCAGACTCCTCTCCTCCCACGACAAGCTCTCTCACCATGTCAAGGAGCTTGTCCAGGGCATCATCGAGGGTGAGACGCGTGTCCTCGCTGCTTCCATGACCATGGAGGAGATTTTCAGAGGCACCAAATCGTTTAAACAGGAAGTGTTCGAGAAGGTTCAGCTGGAGCTTAACCAGTTCGGCCTTCTGATTTACAACGCCAACGTTAAGCAACTTGTTGACGTGCCAGGTCATGAGTATTTCTCTTACTTGGGCCAGAAGACTCAGATGGAAGCTGCCAACCAAGCCAAAGTTGACGTGGCTGAGGCCAAGATGAAAGGAGAGGTTGGATCGAAGCAGAGACAAGGGCAAACGCTTCAGAATGCTGCCAAGATCGATGCGGAAACTAAGATAATATCGACGCAGAGGCAAGGAGATGGTAAGAAGGAGGAAATAAAGGTGAGGACAGAGGTTAAGGTGTTTGAGAATGAGAGAGAGGCTGTGGTGGCAGAGGCAAATTCCGAGCTTGCAAAGAAAAAAGCTGTGTGGGCTCAAACGGCGCAGGTGGCAGAAGTGGAGGCCGCCAAAGCTGTGGCTCTCAGAGAAGCGGAATTGCAGAGAGAAGTTGAGAGGATGAATGCTCTTACAAGGACTGAGAAGCTTAAAGCTGAGTTCCTCAGCAAAGCAAGTGTTGAGTATGAAACCAAGGTACAAGAGGCAAACTGGGAGTTGTACAAGAAGCAAAAGGCGGCGGAAGCAATATTGTTTGAGAAGGAGAAAGAGGCGGAAGCGCAAAAAGCATTAGCGGAGGCAGCATTTTTCAGTCGGCAACAAGAAGCTGAAGCAGAACTATTTGCAAAGAAAAAGGAGGCAGAAGGGCTTGTGGCACTTGGGCAGGCCCAGGGGGCATATTTAAAGACACTTCTTGGTGCACTGGGAGGCAACTATGGCAACCTAAGGGACTACTTGATGATAAATAGTGGCATGTTTCAAGAGATTGCCAAGACTAATGCCGATGCAATTCGTGGACTTGAGCCAAAGATTAGTATTTGGACTAATGGTGGAGATACAAATGATGGCTATGGAAGTGGTGCCATGAAGGATGTTGCTGGTGTCTACAAGATGTTGCCACCTTTGTTTAAGACAGTTCATGAGCAAACCGGTATGCTGCCACCCGCTTGGATGGGAACCCTGCCCGATAATGGTTCTTGA
>Glyma06g06930.1 sequence type=predicted peptide gene model=Glyma06g06930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYKVANASEYLVITGVGITDIKLAKKAWVLPGQSCTVFDLSPVNYTFEVQAMSAEKLPFILPAVFTIGPRVEDEDSLLKYARLLSSHDKLSHHVKELVQGIIEGETRVLAASMTMEEIFRGTKSFKQEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEAKMKGEVGSKQRQGQTLQNAAKIDAETKIISTQRQGDGKKEEIKVRTEVKVFENEREAVVAEANSELAKKKAVWAQTAQVAEVEAAKAVALREAELQREVERMNALTRTEKLKAEFLSKASVEYETKVQEANWELYKKQKAAEAILFEKEKEAEAQKALAEAAFFSRQQEAEAELFAKKKEAEGLVALGQAQGAYLKTLLGALGGNYGNLRDYLMINSGMFQEIAKTNADAIRGLEPKISIWTNGGDTNDGYGSGAMKDVAGVYKMLPPLFKTVHEQTGMLPPAWMGTLPDNGS* >Glyma06g06930.2 sequence type=predicted peptide gene model=Glyma06g06930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYKVANASEYLVITGVGITDIKLAKKAWVLPGQSCTVFDLSPVNYTFEVQAMSAEKLPFILPAVFTIGPRVEDEDSLLKYARLLSSHDKLSHHVKELVQGIIEGETRVLAASMTMEEIFRGTKSFKQEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEAKMKGEVGSKQRQGQTLQNAAKIDAETKIISTQRQGDGKKEEIKVRTEVKVFENEREAVVAEANSELAKKKAVWAQTAQVAEVEAAKAVALREAELQREVERMNALTRTEKLKAEFLSKASVEYETKVQEANWELYKKQKAAEAILFEKEKEAEAQKALAEAAFFSRQQEAEAELFAKKKEAEGLVALGQAQGAYLKTLLGALGGNYGNLRDYLMINSGMFQEIAKTNADAIRGLEPKISIWTNGGDTNDGYGSGAMKDVAGVYKMLPPLFKTVHEQTGMLPPAWMGTLPDNGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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