Glyma06g06910 - SoyBase

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Report for Sequence Feature Glyma06g06910

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4999564
stop:	5001319
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g06910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF06087	PFAM	Tyrosyl-DNA phosphodiesterase	JGI		ISS
UniRef100_G7KVX8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tyrosyl-DNA phosphodiesterase n=1 Tax=Medicago truncatula RepID=G7KVX8_MEDTR	SoyBase	E_val: 1.00E-14	ISS
UniRef100_I1JUA1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUA1_SOYBN	SoyBase	E_val: 7.00E-26	ISS

Expression Patterns of Glyma06g06910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g06910

Paralog	Evidence	Comments
Glyma04g06820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g06910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g065500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g06910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g06910

Limit To All Plant Sequences

>Glyma06g06910.1   sequence type=CDS   gene model=Glyma06g06910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCACTGTCACCTAACTACTTGTGTGAGAGGATCTCTGATAAAGGCTGTATCTTGCAGGATGCCTTTCAAGTTCTCGAGCAGGGTTCCCATCCAAGCTGGCGACACCAGCAACCTCCTTAATGCCACCACTTGCACCATTTGCTTCGCCACCATTAGTCCAAATACTAATCTTTGGCTCAAGTCCACGAATTGCATCTGCATTAGTCTTGGCAATTTCTTGAAACATGCCACTATTAATCATCAAGTAGTCCCTCAGACTGCCGTATTATCTGGAAATACCCTTTTCCCAAATAGTTGGTTCATGTTAACTTCGCCTAATCTTAGCAAAGCTGCCTGGGGAGCTCTCCAGAAGAATAATACTCAGTTGATGATTCCTCACACCCAAGAATTGGCAAGCTTCATGATTTTCAAACCTTGCCTAATGACATACAAGAATCTAAAGATGCCAAGAAAAGTGTTTACCCTGATTGTTTTTAATTTGTTTCTTATCATACTTGGGGCATTTGCAATCAAATACATTTTATCCTGTTCTCCAAAGCTGGGAGTGCTATTTTTACCATCATTATTCAAACAACGTGGATCTGTATTTTCCTGTACCAGTAATGTTACACTATCTGAGGTAGCAAACACATCCTTGCTCTTTGATGCCCGAGAATCTTCTGAGATTAAGAAAACAAAACTAGTAACCCTAACTGGGCTGAAAAAGGAGAGTATGCATTCATCATCTGAAGTTTATTATCCCTCTACCTTTGCCTTACGAGCTCCCTCCCCTGCCTTATTCTTCCCTAGAAAGATGTCTATGGTCAAGTTTGGCCACGGATGTGAGCATATCAAAGATTGA

Predicted protein sequences of Glyma06g06910

Limit To All Plant Sequences

>Glyma06g06910.1   sequence type=predicted peptide   gene model=Glyma06g06910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYHCHLTTCVRGSLIKAVSCRMPFKFSSRVPIQAGDTSNLLNATTCTICFATISPNTNLWLKSTNCICISLGNFLKHATINHQVVPQTAVLSGNTLFPNSWFMLTSPNLSKAAWGALQKNNTQLMIPHTQELASFMIFKPCLMTYKNLKMPRKVFTLIVFNLFLIILGAFAIKYILSCSPKLGVLFLPSLFKQRGSVFSCTSNVTLSEVANTSLLFDARESSEIKKTKLVTLTGLKKESMHSSSEVYYPSTFALRAPSPALFFPRKMSMVKFGHGCEHIKD*

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