Report for Sequence Feature Glyma06g06880
Feature Type: gene_model
Chromosome: Gm06
Start: 4957908
stop: 4962090
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g06880
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G32030 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80610.1); Has 63 Blast hits to 59 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:15490903-15493007 FORWARD LENGTH=253
SoyBase E_val: 1.00E-28 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_G7JFP1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase n=1 Tax=Medicago truncatula RepID=G7JFP1_MEDTR
SoyBase E_val: 1.00E-13 ISS
UniRef100_I1K8R4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8R4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g06880
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g06880
Paralog Evidence Comments
Glyma04g06800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g06880 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g065100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g06880
Coding sequences of Glyma06g06880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g06880.1 sequence type=CDS gene model=Glyma06g06880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGAACGACGACGAGTGGGTGCGTGCGGCGATGGAGGATGACACCGTTGTGGTGGAGCTTCTGCTACGCCTCAAGCAAGGTACCGTTTTACACAAATCTCACCACCAGCAGCTTTTACCTTTCTCCTGGGGAGTCAAACAGCCGCGCTCAAGATCAAGGCTAACCTCCGCCGCCGTCTCCCGATGCGACGCCGCCGTTTCCACCAGATGCAGCCCCACCACGCCCCTCTCTTGGAGCGCCGGCGCCGACAGTTACGAAGACTCCAGCCGCCACCACCACCATCACGCCGCCGTATCCAAGGCTACTGCTACAAGTGGATACACTGGCAACTCTGCTTCTACCAAGAGGTGCAGAAGAAAAAAGACCTTTGCAGAATTAAAGGAAGAGGAGAGCTCCCTGCTAAAGGAAAGCATATATCTGAAAAAGGAAATAGCGTCTGTAAATGCAAACTTTGAGGCACAGAGAGCTAAAAATGAGAGTCTGAAGAGAATGAAGCTTGATGTGGGATCAAAATATCAGAACAATCCAAGTTCAACATCTGTTGAACCGCAGCGTCTGCCTGCTGGTCAACCCCATCAGAGAATAGTGGTATCTACGGAGGCCCTCATACGTCCCATTCAAGAAGATACTCATTCACTTGCATCAGAATCTAGGCCAAACAGGATAAAATCAACCGGGGAAAGTTTTTTCTTGATACCAGATCTAAATATGGTGCCGTCCGAGGATGTTTCTTGCACTGACGCTCTATGTGGAATGAGTTGA
Predicted protein sequences of Glyma06g06880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g06880.1 sequence type=predicted peptide gene model=Glyma06g06880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVNDDEWVRAAMEDDTVVVELLLRLKQGTVLHKSHHQQLLPFSWGVKQPRSRSRLTSAAVSRCDAAVSTRCSPTTPLSWSAGADSYEDSSRHHHHHAAVSKATATSGYTGNSASTKRCRRKKTFAELKEEESSLLKESIYLKKEIASVNANFEAQRAKNESLKRMKLDVGSKYQNNPSSTSVEPQRLPAGQPHQRIVVSTEALIRPIQEDTHSLASESRPNRIKSTGESFFLIPDLNMVPSEDVSCTDALCGMS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
