Glyma06g06840 - SoyBase

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Report for Sequence Feature Glyma06g06840

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4915307
stop:	4919791
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g06840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34190	AT	Annotation by Michelle Graham. TAIR10: Xanthine/uracil permease family protein \| chr2:14437065-14439407 FORWARD LENGTH=524	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0022857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity	SoyBase	N/A	ISS
KOG1292	KOG	Xanthine/uracil transporters	JGI		ISS
PTHR11119	Panther	PURINE PERMEASE	JGI		ISS
PTHR11119:SF8	Panther	SODIUM-DEPENDENT VITAMIN C TRANSPORTER	JGI		ISS
PF00860	PFAM	Permease family	JGI		ISS
UniRef100_G7LJF6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleobase ascorbate transporter n=1 Tax=Medicago truncatula RepID=G7LJF6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K8R0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8R0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g06840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g06840

Paralog	Evidence	Comments
Glyma04g06750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g06840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g064700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g06840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g06840

Limit To All Plant Sequences

>Glyma06g06840.1   sequence type=CDS   gene model=Glyma06g06840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCTCCAAAGCCAGAGGAGATAAGCCACCCACCAATGGACCAACTTCAAGGCTTAGAGTACTGTATCGACTCAAACCCTTCCTGGGTGGAGACAATAGTTCTTGGTTTCCAGCATTACATTTTGGCCTTAGGAACTGCAGTCATGATTCCTTCATTTCTTGTGCCTTTGATGGGTGGAAGTGATGATGATAAAGTGAGGGTGGTGCAGACGCTGCTTTTTGTTGAAGGAATTAATACACTTCTGCAGACACTCTTTGGAACCCGGTTACCAACAGTGATAGGAGGGTCTTATGCATTTATGGTCCCCATTATATCGATAATTCATGATTCCTCATTGACAAGGATAGAGGACCCACATTTGAGATTTCTTAACACCATGAGAGCAGTACAAGGGGCAATGATAGTAGCATCAAGCATACAAATCATTTTGGGCTTTAGTCAGTTATGGGCCATTTGTTCTAGGTTTTTCAGTCCACTTGGAATGGTCCCAGTAATTGCATTAGTTGGATTTGGATTATTTGACCGAGGATTCCCTGTGGTTGGGCATTGCGTTGAAATTGGAATTCCCATGTTAATTCTGTTTGTAGTCTTCTCTCAGTACTTGAAAAATTTTCATACAAGACAACTACCAATACTAGAGAGATTTGCTCTACTAATATCAACCACAGTGATATGGGCATATGCACATCTCTTAACAGCAAGTGGAGCATACAAACACCGTCCTGATTTAACCCAACATAATTGCAGAACAGACAGGGCCAACCTCATTTCTTCTGCTCCATGGATAAAGATTCCATACCCTCTTGAGTGGGGTGCTCCTACATTTGATGCTGGTCATGCTTTTGGAATGATGGCTGCTGTTTTAGTCTCCTTAATTGAGTCAACTGGGGCATACAAAGCTGCATCACGACTTGCAAGTGCAACACCACCTCCAGCTCATGTTCTGAGCCGTGGTATTGGTTGGCAAGGAGTTGGAATCTTGCTGAATGGCCTTTTTGGAACACTGACTGGTTCAACAGTTTCTGTAGAGAATGTGGGGCTCCTAGGAAGCACTCGTGTTGGGAGTCGAAGGGTAATTCAAATTTCAGCTGGTTTTATGATATTCTTCTCAATGTTAGGAAAATTTGGAGCTTTATTTGCATCAATACCATTCCCCATTTTTGCAGCTGTATACTGTGTTCTGTTTGGCCTTGTGGCTTCTGTGGGGCTATCATTCTTGCAGTTCACTAACATGAACTCAATGAGGAACCTCTTTATTCTTGGTGTAGCCCTTTTCTTAGGTTTTTCTGTTCCTGAGTATTTCAGAGAGTACACTTCAAAGGCCCTTCATGGTCCTACTCATACAAGGGCTGGATGGTTCGATGATTTCCTTAATACTATATTCTTCTCATCTCCAACTGTTGCATTGATTGTTGCTGTATTCTTGGACAATACTCTTGATTACAAGGATAGCGCCAAAGATAGGGGAATGCCATGGTGGGCCAAGTTTAGAACATTCAATGGAGATAGCCGAAATGAAGAGTTCTATACACTTCCTTTCAACCTCAACCGGTTTTTCCCTCCACGATAA

Predicted protein sequences of Glyma06g06840

Limit To All Plant Sequences

>Glyma06g06840.1   sequence type=predicted peptide   gene model=Glyma06g06840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAPKPEEISHPPMDQLQGLEYCIDSNPSWVETIVLGFQHYILALGTAVMIPSFLVPLMGGSDDDKVRVVQTLLFVEGINTLLQTLFGTRLPTVIGGSYAFMVPIISIIHDSSLTRIEDPHLRFLNTMRAVQGAMIVASSIQIILGFSQLWAICSRFFSPLGMVPVIALVGFGLFDRGFPVVGHCVEIGIPMLILFVVFSQYLKNFHTRQLPILERFALLISTTVIWAYAHLLTASGAYKHRPDLTQHNCRTDRANLISSAPWIKIPYPLEWGAPTFDAGHAFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGVGILLNGLFGTLTGSTVSVENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGALFASIPFPIFAAVYCVLFGLVASVGLSFLQFTNMNSMRNLFILGVALFLGFSVPEYFREYTSKALHGPTHTRAGWFDDFLNTIFFSSPTVALIVAVFLDNTLDYKDSAKDRGMPWWAKFRTFNGDSRNEEFYTLPFNLNRFFPPR*

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