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Report for Sequence Feature Glyma06g06791

Feature Type:gene_model
Chromosome:Gm06
Start:4879511
stop:4881995
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g06791
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31985AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L39 family protein | chr4:15469931-15470366 FORWARD LENGTH=51 SoyBaseE_val: 5.00E-27ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0022625GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG0002 KOG 60s ribosomal protein L39 JGI ISS
PTHR19970Panther RIBOSOMAL PROTEIN L39E JGI ISS
PF00832PFAM Ribosomal L39 protein JGI ISS
UniRef100_I1K8Q3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Magnoliophyta RepID=I1K8Q3_SOYBN SoyBaseE_val: 1.00E-31ISS
UniRef100_Q6KAJ8UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L39-1 n=10 Tax=Magnoliophyta RepID=RL391_ORYSJ SoyBaseE_val: 3.00E-27ISS

Expression Patterns of Glyma06g06791
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g06791 not represented in the dataset
Glyma06g06791 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g06791
ParalogEvidenceComments
Glyma04g06700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g06791 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma06g06791
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g06791
>Glyma06g06791.2   sequence type=transcript   gene model=Glyma06g06791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAGAAGGAGAGTTAGTGCACCTCCGTAGGGTTTGGTTATTAGGGTTTTCGCTCACCCGTGTGCAGTCGAGCCTCCCGAAGAAAAAGCGAAAATGCCGTCGCACAAGACATTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATCCCCTACTGGATCCGCATGAGGACCGACAACACCATCAGGTACAACGCGAAGCGCCGTCACTGGCGTCGCACCAAGCTTGGATTCTGAGGTGCTTGCTTTGCCTCGGTTCTGTTTATCCAATTAATTAGTGTTTTATTTTCTTGAGCCAAAAACAATGCTTTGGAGATTTTAATATTTTGCATTTTGTTCCAAGACTATATTGTGTAAGGAACTTATTGTAGTTCAGACTAATGGTGGTGTTGGTCACCTTTTTTTAAAAGTATTTTGGAATTCTTTGCGTTTGGTTTA

>Glyma06g06791.3   sequence type=transcript   gene model=Glyma06g06791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAGAAGGAGAGTTAGTGCACCTCCGTAGGGTTTGGTTATTAGGGTTTTCGCTCACCCGTGTGCAGTCGAGCCTCCCGAAGAAAAAGCGAAAATGCCGTCGCACAAGACATTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCCATCCCCTACTGGATCCGCATGAGGACCGACAACACCATCAGGTACAACGCGAAGCGCCGTCACTGGCGTCGCACCAAGCTTGGATTCTGAGGTGCTTGCTTTGCCTCGGTTCTGTTTATCCAATTAATTAGTGTTTTATTTTCTTGAGCCAAAAACAATGCTTTGGAGATTTTAATATTTTGCATTTTGTTCCAAGACTATATTGTGTAAGGAACTTATTGTAGTTCAGACTAATGGTGGTGTTGGTCACCTTTTTTTAAAAGTATTTTGGAATTCTTTGCGTTTGGTTTA

>Glyma06g06791.4   sequence type=transcript   gene model=Glyma06g06791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACAACTTCTTTTGTTTAGATATAATTCAGATAATTAAATTGAATGGATTTTATTTAACTTAAGCATTTAGATAAAGTAATAAATAATTTTTTTGATATATTACAATAATAATGATAAAACAATGATAAAAATACTATTATTAAAGGTCAATTTATTAGATTTTAGTATTTTACAACTCTTTAAGTAATTTAATTTTTTTTAAAACACGTTTTCATAGTATATAAAAGTTGATTGCATTTTTTTTTACATAAAAACAATTTTTTAATTTTATTTTATAGATGAATATTCGTAAGATCAAACCCATAGCCCATTAAGTGAATCTTGTGAGCCCGACCCAATTGCCAAGCAAAATTCATTTTCTGTTACTTTACTTTTAATTTACAATAAAAAAAAAACATAATAACAATAAAACCCACTATTTAGGTATAAAAGAAGGAGAGTTAGTGCACCTCCGTAGGGTTTGGTTATTAGGGTTTTCGCTCACCGGTGTGCAGTCGAGCCCCCGAAGAAAAAGCGAAAATGCCGTCGCACAAGACATTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATCCCCTACTGGATCCGCATGAGGACCGACAACACCATCAGGTACAACGCGAAGCGCCGTCACTGGCGTCGCACCAAGCTTGGATTCTGAGGTGCTTGCTTTGCCTCGGTTCTGTTTATCCAATTAATTAGTGTTTTATTTTCTTGAGCCAAAAACAATGCTTTGGAGATTTTAATATTTTGCATTTTGTTCCAAGACTATATTGTGTAAGGAACTTATTGTAGTTCAGACTAATGGTGGTGTTGGTCACCTTTTTTTAAAAGTATTTTGGAATTCTTTGCGTTTGGTTTAGTTTTTGTCGCGTTGAAT
Coding sequences of Glyma06g06791
>Glyma06g06791.1   sequence type=CDS   gene model=Glyma06g06791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTTTTGCAAGCCGTCGCACAAGACATTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATCCCCTACTGGATCCGCATGAGGACCGACAACACCATCAGGTACAACGCGAAGCGCCGTCACTGGCGTCGCACCAAGCTTGGATTCTGA

>Glyma06g06791.2   sequence type=CDS   gene model=Glyma06g06791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTCGCACAAGACATTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATCCCCTACTGGATCCGCATGAGGACCGACAACACCATCAGGTACAACGCGAAGCGCCGTCACTGGCGTCGCACCAAGCTTGGATTCTGA

>Glyma06g06791.3   sequence type=CDS   gene model=Glyma06g06791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTCGCACAAGACATTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCCATCCCCTACTGGATCCGCATGAGGACCGACAACACCATCAGGTACAACGCGAAGCGCCGTCACTGGCGTCGCACCAAGCTTGGATTCTGA

>Glyma06g06791.4   sequence type=CDS   gene model=Glyma06g06791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTCGCACAAGACATTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATCCCCTACTGGATCCGCATGAGGACCGACAACACCATCAGGTACAACGCGAAGCGCCGTCACTGGCGTCGCACCAAGCTTGGATTCTGA
Predicted protein sequences of Glyma06g06791
>Glyma06g06791.1   sequence type=predicted peptide   gene model=Glyma06g06791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFFCKPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF*

>Glyma06g06791.2   sequence type=predicted peptide   gene model=Glyma06g06791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF*

>Glyma06g06791.3   sequence type=predicted peptide   gene model=Glyma06g06791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF*

>Glyma06g06791.4   sequence type=predicted peptide   gene model=Glyma06g06791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF*






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