Glyma06g06780 - SoyBase

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Report for Sequence Feature Glyma06g06780

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4866341
stop:	4867810
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g06780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25190	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr5:8707007-8707655 REVERSE LENGTH=181	SoyBase	E_val: 2.00E-79	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_G7J9X0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive transcription factor SHINE n=2 Tax=Medicago truncatula RepID=G7J9X0_MEDTR	SoyBase	E_val: 4.00E-93	ISS
UniRef100_I1K8Q2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8Q2_SOYBN	SoyBase	E_val: 2.00E-142	ISS

Expression Patterns of Glyma06g06780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g06780

Paralog	Evidence	Comments
Glyma04g06690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g06780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g064000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g06780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g06780

Limit To All Plant Sequences

>Glyma06g06780.1   sequence type=CDS   gene model=Glyma06g06780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAGATCACAACAGCGATACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCCATATTGAAAACTAGGATATGGCTAGGGACTTTTGAAACTGCTGAGGATGCAGCTAGAGCCTATGATGAAGCAGCAAGGCTAATGTGTGGCACAAGGGCAAGAACAAACTTCCCTTACAACCCCAATGCGTCTCAATCTTCATCTTCCAAGCTTCTCTCAGCAACTTTAACTGCAAAACTGCATAGGTGCTACATGGCTTCTTTGCAAATGACAAGGCCATCATCACAGCCAGAGACTCAGAGAGTGGTGGCTTCACCAAATGTCATCACCTCCTCGGCAAGCAACTTCTCCATGAAGAGTAACGAAACTGAGACAATGTTGTTGCCACAGAAGAGACAAGAGGAGGAGCAAGAAGGAGAGGGGAATTGGGTTTTCAAGAAGGTTAAGGTGGAAAATGCTCAACAGTTCAAGCCTCTTGAAGAGGACCACATCGAGCAAATGATAGAGGAGTTGCTGCATTACGGGTCCATTGAACTATGCTCTGTGATTCCAGCACAGGCTCTTTGA

Predicted protein sequences of Glyma06g06780

Limit To All Plant Sequences

>Glyma06g06780.1   sequence type=predicted peptide   gene model=Glyma06g06780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSSQPETQRVVASPNVITSSASNFSMKSNETETMLLPQKRQEEEQEGEGNWVFKKVKVENAQQFKPLEEDHIEQMIEELLHYGSIELCSVIPAQAL*

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