Report for Sequence Feature Glyma06g06760
Feature Type: gene_model
Chromosome: Gm06
Start: 4841220
stop: 4843458
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g06760
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G25170 AT
Annotation by Michelle Graham. TAIR10: PPPDE putative thiol peptidase family protein | chr5:8693257-8694438 FORWARD LENGTH=218
SoyBase E_val: 1.00E-99 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG0324
KOG
Uncharacterized conserved protein
JGI ISS
PTHR12378 Panther
UNCHARACTERIZED
JGI ISS
PF05903 PFAM
PPPDE putative peptidase domain
JGI ISS
UniRef100_C6T0E5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=C6T0E5_SOYBN
SoyBase E_val: 8.00E-166 ISS
UniRef100_O81728 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=O81728_ARATH
SoyBase E_val: 1.00E-89 ISS
Expression Patterns of Glyma06g06760
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g06760
Paralog Evidence Comments
Glyma04g06670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g06760 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g063800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g06760
Coding sequences of Glyma06g06760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g06760.1 sequence type=CDS gene model=Glyma06g06760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTGCGCAAGCTTGTGTCAGGGCCACGCAAGAACAAGCCTGGCACAGTTCCCGTTCACCTCAACGTCTATGATCTCACCCCAATCAACGGCTATGCCTATTGGCTTGGCCTTGGAGTCTACCATTCTGGGGTTCAAGTTCATGGATTGGAATATGGTTTTGGTGCGCACGAGCACGACACAACGGGGATTTTCGAAGTCCAACCCAAACACTGCCCTGGGTTCACTTTCAGAAAGTCAATTTTCATCGGAACAACAGATCTGGGTCCGAAGGATGTTCGAGCATTCATGGAGAAGCTGGCTCAGGATTACTCCGGCAACACCTATCATCTCATTTCCAAGAATTGCAACCATTTCTGTAACGATGTTTGTCTCAAATTGACCGGAAAGTCAATCCCTCGTTGGGTCAACCGGCTTGCTCGACTTGGTCTTCTGTGCAACTGTGTTCTCCCACCTGGCCTAAATGACACAAAGGTTTCACAAGCTGCATCAGACAGGGTTCAAGAAGGTGAAAAGAGGAAAATAAGAAGCCAGTCCTGCAGGTACGAGGGTTCCTCCAATCCTTCATCGTCGCAACGTTCAGCAATTAAAAGTAGTAGTAGCCAAAGGCATTGCCATCCTCCATCTTCATCTTTGATTAATGCTGCTTCAGCTTCAACCTTAACAGTGAAGTAA
Predicted protein sequences of Glyma06g06760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g06760.1 sequence type=predicted peptide gene model=Glyma06g06760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLRKLVSGPRKNKPGTVPVHLNVYDLTPINGYAYWLGLGVYHSGVQVHGLEYGFGAHEHDTTGIFEVQPKHCPGFTFRKSIFIGTTDLGPKDVRAFMEKLAQDYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLGLLCNCVLPPGLNDTKVSQAASDRVQEGEKRKIRSQSCRYEGSSNPSSSQRSAIKSSSSQRHCHPPSSSLINAASASTLTVK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
