Glyma06g06700 - SoyBase

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Report for Sequence Feature Glyma06g06700

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4782702
stop:	4785080
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g06700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G32070	AT	Annotation by Michelle Graham. TAIR10: Polynucleotidyl transferase, ribonuclease H-like superfamily protein \| chr2:13640829-13641656 REVERSE LENGTH=275	SoyBase	E_val: 9.00E-158	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009451	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA modification	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004540	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribonuclease activity	SoyBase	N/A	ISS
KOG0304	KOG	mRNA deadenylase subunit	JGI		ISS
PTHR10797	Panther	CCR4-ASSOCIATED FACTOR	JGI		ISS
PF04857	PFAM	CAF1 family ribonuclease	JGI		ISS
UniRef100_B9RNX3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ccr4-associated factor, putative n=1 Tax=Ricinus communis RepID=B9RNX3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K8P4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8P4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g06700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g06700

Paralog	Evidence	Comments
Glyma04g06620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g06700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g063300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g06700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g06700

Limit To All Plant Sequences

>Glyma06g06700.1   sequence type=CDS   gene model=Glyma06g06700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGATTTTACCGAAAGGCGATTCGGTTCAAATCAGGGAAGTTTGGAACGATAACCTCGAGGAGGAGTTCGCGTTGATCCGTGAAATCGTGGACGAGTATAACTACGTGGCGATGGATACCGAGTTCCCCGGCGTGGTTCTCCGTCCGGTGGGGAATTTCAAGAACATCAACGACTACAACTACCAAACCTTGAAGGACAACGTGGACATGTTGAAGCTGATCCAATTAGGTCTCACTTTCTCCGACGAGAATGGTAACCTCCCTACCTGCGGCACGGAGAGCACCTGCATCTGGCAATTCAACTTCCGCGAGTTCAACATCAGCGAAGACATCTTCGCGAGCGACTCGATCGAGTTGCTGCGCCAGTGCGGGATCGACTTCAAGAAGAACAGCGAGAAAGGGATCGACGTGAACCGGTTCGGGGAGCTCCTCATGTCCTCCGGGATCGTGTTGAACGACGCCGTGCACTGGGTTACCTTCCACAGCGGGTACGATTTCGGGTACCTCCTGAAGCTGTTGACATGCCGGAGCTTGCCGGAGACGCAGGCCGGGTTCTTCGATCTGATCAAGATGTATTTTCCGATGGTGTATGACATCAAGCACCTGATGAAGTTCTGCAACAGCCTCCACGGAGGGTTGAACAAGCTTGCGGAGTTGTTGGAGGTTGAGAGGGTTGGCGTGTGCCATCAGGCTGGGTCTGATAGTTTACTCACTTCTTGTACATTTAGAAAGTTGAGGGATGCGTTCTTCAGTGGCTCCACGGAGAAATATGCTGGTGTCTTGTATGGTTTAGGTGTTGAGAGTGGACAGACTAATTGA

Predicted protein sequences of Glyma06g06700

Limit To All Plant Sequences

>Glyma06g06700.1   sequence type=predicted peptide   gene model=Glyma06g06700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSILPKGDSVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTESTCIWQFNFREFNISEDIFASDSIELLRQCGIDFKKNSEKGIDVNRFGELLMSSGIVLNDAVHWVTFHSGYDFGYLLKLLTCRSLPETQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDAFFSGSTEKYAGVLYGLGVESGQTN*

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