Glyma06g06660 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g06660

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4756547
stop:	4760807
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g06660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25110	AT	Annotation by Michelle Graham. TAIR10: stromal cell-derived factor 2-like protein precursor \| chr2:10684428-10685838 FORWARD LENGTH=218	SoyBase	E_val: 1.00E-128	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0052033	GO-bp	Annotation by Michelle Graham. GO Biological Process: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3358	KOG	Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains	JGI		ISS
PTHR10050	Panther	MANNOSYLTRANSFERASE	JGI		ISS
PTHR10050:SF6	Panther	STROMAL CELL-DERIVED FACTOR 2-RELATED	JGI		ISS
PF02815	PFAM	MIR domain	JGI		ISS
UniRef100_G7J9V5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Stromal cell-derived factor 2-like protein n=1 Tax=Medicago truncatula RepID=G7J9V5_MEDTR	SoyBase	E_val: 1.00E-140	ISS
UniRef100_I1K8P0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8P0_SOYBN	SoyBase	E_val: 1.00E-159	ISS

Expression Patterns of Glyma06g06660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g06660

Paralog	Evidence	Comments
Glyma04g06581	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g06660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g062900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g06660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g06660

Limit To All Plant Sequences

>Glyma06g06660.2   sequence type=transcript   gene model=Glyma06g06660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGGGTGCTGGTGGTGCAGAAAGGGCCATTTTCTGAATGCGCTCTATCTATCTCTTCCGATCTGGCTACTAACCCTAACCCGCTTCGAACCGTGGCTTCCTCGGCCTCGCAGAACCTCTCTCGAAGAAAATCTTCTTCTTCGTCTTCGTTTTCTCAACAAACTTCCGGGTCGACCCGGATCGTTTACCGCGAACCTCGGATCCCATCGGAATCCAATTTTCCGATCTGGCAGCAGAACTGGTTCATCGCATTGCTCTTCCTCATGGCTCTCGGATTCTTCGCCCTCGCTCTCTTCCTCTTCATCACTTTCGACTCTGACATCGCTCCTTCTTCCACCGCATCCGCCGCTTCCTCCGAAGGCGTCGAGGTTACTTACGGCACGGTTCTGAAGCTTATGCACGAGAAGACCAAATTTCGGTTGCATTCTCATGACGTGCCCTACGGTTCTGGCAGTGGACAACAATCGGTTACTGGTTTCCCCAGTGTTGACGATTCCAATAGTTATTGGATTGTAAGACCTGAGCCAGGAACTTCTGCTAAACAAGGTGACCCCATTAAAAGTGGCACAATCATTAGATTGCAGCACATGAGGACAAGGAAGTGGCTGCACAGCCACTTGCATGCATCCCCGATATCAGGCAATCTTGAGGTAAGTTGTTTTGGAGGAGAATCCGAATCTGACACCGGGGACTATTGGAAGCTTATAATAGAAGGAAGTGGAAAGACTTGGAAGCAGGATCAGAAAATTCGCCTTCAGCATATTGACACTGGAGGCTATCTACATAGTCATGATAAGAAATACAGTCGTATTGCTGGGGGACAGCAGGAGGTTTGTGGTGTTCGTGAAAAGCGTGCTGACAATGTCTGGTTGGCAGCCGAAGGTGTCTACCTTCCCGTTACGGAAAGCAAATGAGTTAATTAGTTATTGTAAACCATGGGTGGTGGGAGTGGCACAGATGCAGATTTTTCTATTAAAGGATAAATATACGGGACTATTTTAGGGTTAGATAACGGTAGTAATATTTTGTCATAGTTACACTTTGTTATGTAGTAAGTGCATGGCCCCTTTTTCCCCGCAGAAAATACTTGGTGTGGTTTCTTTTGTTTTTGTGACGCAATATGCTAATTGCTAATTCCTCTAATTGGACTACGA

Coding sequences of Glyma06g06660

Limit To All Plant Sequences

>Glyma06g06660.1   sequence type=CDS   gene model=Glyma06g06660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTCGGATTCTTCGCCCTCGCTCTCTTCCTCTTCATCACTTTCGACTCTGACATCGCTCCTTCTTCCACCGCATCCGCCGCTTCCTCCGAAGGCGTCGAGGTGCAGGTTACTTACGGCACGGTTCTGAAGCTTATGCACGAGAAGACCAAATTTCGGTTGCATTCTCATGACGTGCCCTACGGTTCTGGCAGTGGACAACAATCGGTTACTGGTTTCCCCAGTGTTGACGATTCCAATAGTTATTGGATTGTAAGACCTGAGCCAGGAACTTCTGCTAAACAAGGTGACCCCATTAAAAGTGGCACAATCATTAGATTGCAGCACATGAGGACAAGGAAGTGGCTGCACAGCCACTTGCATGCATCCCCGATATCAGGCAATCTTGAGGTAAGTTGTTTTGGAGGAGAATCCGAATCTGACACCGGGGACTATTGGAAGCTTATAATAGAAGGAAGTGGAAAGACTTGGAAGCAGGATCAGAAAATTCGCCTTCAGCATATTGACACTGGAGGCTATCTACATAGTCATGATAAGAAATACAGTCGTATTGCTGGGGGACAGCAGGAGGTTTGTGGTGTTCGTGAAAAGCGTGCTGACAATGTCTGGTTGGCAGCCGAAGGTGTCTACCTTCCCGTTACGGAAAGCAAATGA

>Glyma06g06660.2   sequence type=CDS   gene model=Glyma06g06660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTCGGATTCTTCGCCCTCGCTCTCTTCCTCTTCATCACTTTCGACTCTGACATCGCTCCTTCTTCCACCGCATCCGCCGCTTCCTCCGAAGGCGTCGAGGTTACTTACGGCACGGTTCTGAAGCTTATGCACGAGAAGACCAAATTTCGGTTGCATTCTCATGACGTGCCCTACGGTTCTGGCAGTGGACAACAATCGGTTACTGGTTTCCCCAGTGTTGACGATTCCAATAGTTATTGGATTGTAAGACCTGAGCCAGGAACTTCTGCTAAACAAGGTGACCCCATTAAAAGTGGCACAATCATTAGATTGCAGCACATGAGGACAAGGAAGTGGCTGCACAGCCACTTGCATGCATCCCCGATATCAGGCAATCTTGAGGTAAGTTGTTTTGGAGGAGAATCCGAATCTGACACCGGGGACTATTGGAAGCTTATAATAGAAGGAAGTGGAAAGACTTGGAAGCAGGATCAGAAAATTCGCCTTCAGCATATTGACACTGGAGGCTATCTACATAGTCATGATAAGAAATACAGTCGTATTGCTGGGGGACAGCAGGAGGTTTGTGGTGTTCGTGAAAAGCGTGCTGACAATGTCTGGTTGGCAGCCGAAGGTGTCTACCTTCCCGTTACGGAAAGCAAATGA

Predicted protein sequences of Glyma06g06660

Limit To All Plant Sequences

>Glyma06g06660.1   sequence type=predicted peptide   gene model=Glyma06g06660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALGFFALALFLFITFDSDIAPSSTASAASSEGVEVQVTYGTVLKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPSVDDSNSYWIVRPEPGTSAKQGDPIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGGESESDTGDYWKLIIEGSGKTWKQDQKIRLQHIDTGGYLHSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK*

>Glyma06g06660.2   sequence type=predicted peptide   gene model=Glyma06g06660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALGFFALALFLFITFDSDIAPSSTASAASSEGVEVTYGTVLKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPSVDDSNSYWIVRPEPGTSAKQGDPIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGGESESDTGDYWKLIIEGSGKTWKQDQKIRLQHIDTGGYLHSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain