Glyma06g06570 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g06570

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4685681
stop:	4693059
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g06570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25150	AT	Annotation by Michelle Graham. TAIR10: TBP-associated factor 5 \| chr5:8677117-8682058 FORWARD LENGTH=669	SoyBase	E_val: 0	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006366	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0033044	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization	SoyBase	N/A	ISS
GO:0042138	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation	SoyBase	N/A	ISS
GO:0045132	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG0263	KOG	Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA)	JGI		ISS
PTHR19879	Panther	WD40 REPEAT PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
PF04494	PFAM	WD40 associated region in TFIID subunit	JGI		ISS
UniRef100_G7J9V2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription initiation factor TFIID subunit n=1 Tax=Medicago truncatula RepID=G7J9V2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K8N0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K8N0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g06570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g06570

Paralog	Evidence	Comments
Glyma04g06540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g06570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g062300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g06570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g06570

Limit To All Plant Sequences

>Glyma06g06570.2   sequence type=transcript   gene model=Glyma06g06570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAATTTGTAGAAAGTGCAGCTGCGAGGCAGCGAAAGAGAAAGGGATTTACTTCTGAGATCAAAGATGGAGGACGAGAAAATAGTTGGATACGTTACGGCGTTCCTTAAGAAGAAAGGCTTCACGCAAACCGAGAAGATTTTCCAGGAAGAATTCCAACACAACAAGTCCAACACTTCCAATTCCGTTCTGGAACCCGACATTGCCAACCACCTCCTCGCCTTCTCTCAGTATTTCTCCACCTCTGCTGACGTGTCATTTCTTCACCACCACTCTCATAAACCCTATTATGTTGCTTTTGCAGATTGGAGACTGGTCCTGCTAGGTTCCACGACGGCTATAGCAGACTAAGAACATGGACTTATTCTTCACTCGATTTGTACAAGCACGAGTTGCTTCGCGTGCTTTATCCGGTGTTTATCCACTGCTTCATGGATCTTGTCGCCAAAGGACATGTTCAAGAAGCTCGGAACTTCTTCAATACTTTCCGCGAAGACCATGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGAGTTCTCTCTCCTAATCATCTCAAGGAAATGGAATTTGCTCACTCGCTTAGAAAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTTTTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATCAATGAGCATATTAACTTTCAAGTAACCCCTGGTCAACCTAGCTTAATTTCCGATGATCCGGAAGCTGTTACCCTTACTGGAAGCAGCCAGGAAGCAGCAAACCAGATAAATCAAAAAGAAATTCATTGGGGGTTGCTTGAAGACTCTCTTGAAGAACGGCTGGAGAAAGCCGGGGCCTTGCTTTCAGACTCTGAAAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGAATGACGAGACTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGTGCTTCAGTCAAAAAAGTAAAAAAGGACAAAGGTGGAAGTGCAACTGGAAAAAGTGCAAAACCTGAAGCTAACACCATACCTTCAGCTCCTCGAGTTAAGCCAGAACTCCCTTTGCCCGTAATCCCAGCTGAGGCGGAACAGTCCGTCCTTGAGGATTTAAGGAACCGTGTACAGCTTAGCAGTGTTGCATTGCCATCAGTTAGCTTTTACACATTTATCAATACTCATAATGGTTTAAGCTGTTCTTCAATATCCCATGACGGATCATTGATTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACAACAGACCAGTTCTCTTTCGCAGGGTGAGAATGAACAAATATTTGGGCAAGGTGGTGGGAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGCCCTGTTTATGCAGCCTCTTTTAGTCCTGTCGGAGATTTTATCCTTTCATCCTCAGCAGACTCGACAATTCGATTATGGAGCACAAAACTTAATGCCAATCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTGGGGCATTATTTTGCCAGCTCGTCACATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGATAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGTGTCCGGGTTTTCGTTGGCCACAGGGGTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGCGATGAAGATGGCACAATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTCACACCTTTGATTGGGCACACATCATGTGTCTGGTCCCTCGCTTTCAGTTCTGAAGGTTCTGTGATAGCATCTGGATCTGCTGATTGCACTGTAAAATTGTGGGATGTAAATACGAGCACCAAGGTTTCTAGGGCTGAAGAAAAAGGTGGGAGTGCTAACAGACTTAGATCGCTGAAAACTCTACCAACCAAATCTACTCCAGTTTACTCATTGCGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGTGCTCTATCAAAAAGTGGCTAATATATGAGTATGTCTACTAATAGATAAGATCAGATCAAAGTGGTTGAAGCTGAATTTCTCGCCTAAAAAGCATCGCGCATCATAGTTATGTACTCCCTCTGGGTCCTATATGTAGGGCATCTGCACAAGAATTAAGAAGTGTAGTTAATCTAGTGATGTTAAATTTGTCACTAATCTGTATATTTTTTTATAATTAATCTTAAACTTATTGATACCATATTCTCTTTTTCATAGATGCATTTCCACTTTTGTAATGACTAGTGATCCTTTCATATTTTCACGAGAATCCAAAAAATTAATTTATCAAATTTATTGTTTAAGGAT

Coding sequences of Glyma06g06570

Limit To All Plant Sequences

>Glyma06g06570.1   sequence type=CDS   gene model=Glyma06g06570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGACGAGAAAATAGTTGGATACGTTACGGCGTTCCTTAAGAAGAAAGGCTTCACGCAAACCGAGAAGATTTTCCAGGAAGAATTCCAACACAACAAGTCCAACACTTCCAATTCCGTTCTGGAACCCGACATTGCCAACCACCTCCTCGCCTTCTCTCAATTGGAGACTGGTCCTGCTAGGTTCCACGACGGCTATAGCAGACTAAGAACATGGACTTATTCTTCACTCGATTTGTACAAGCACGAGTTGCTTCGCGTGCTTTATCCGGTGTTTATCCACTGCTTCATGGATCTTGTCGCCAAAGGACATGTTCAAGAAGCTCGGAACTTCTTCAATACTTTCCGCGAAGACCATGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGAGTTCTCTCTCCTAATCATCTCAAGGAAATGGAATTTGCTCACTCGCTTAGAAAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTTTTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATCAATGAGCATATTAACTTTCAAGTAACCCCTGGTCAACCTAGCTTAATTTCCGATGATCCGGAAGCTGTTACCCTTACTGGAAGCAGCCAGGAAGCAGCAAACCAGATAAATCAAAAAGAAATTCATTGGGGGTTGCTTGAAGACTCTCTTGAAGAACGGCTGGAGAAAGCCGGGGCCTTGCTTTCAGACTCTGAAAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGAATGACGAGACTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGTGCTTCAGTCAAAAAAGTAAAAAAGGACAAAGGTGGAAGTGCAACTGGAAAAAGTGCAAAACCTGAAGCTAACACCATACCTTCAGCTCCTCGAGTTAAGCCAGAACTCCCTTTGCCCGTAATCCCAGCTGAGGCGGAACAGTCCGTCCTTGAGGATTTAAGGAACCGTGTACAGCTTAGCAGTGTTGCATTGCCATCAGTTAGCTTTTACACATTTATCAATACTCATAATGGTTTAAGCTGTTCTTCAATATCCCATGACGGATCATTGATTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACAACAGACCAGTTCTCTTTCGCAGGGTGAGAATGAACAAATATTTGGGCAAGGTGGTGGGAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGCCCTGTTTATGCAGCCTCTTTTAGTCCTGTCGGAGATTTTATCCTTTCATCCTCAGCAGACTCGACAATTCGATTATGGAGCACAAAACTTAATGCCAATCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTGGGGCATTATTTTGCCAGCTCGTCACATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGATAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGTGTCCGGGTTTTCGTTGGCCACAGGGGTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGCGATGAAGATGGCACAATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTCACACCTTTGATTGGGCACACATCATGTGTCTGGTCCCTCGCTTTCAGTTCTGAAGGTTCTGTGATAGCATCTGGATCTGCTGATTGCACTGTAAAATTGTGGGATGTAAATACGAGCACCAAGGTTTCTAGGGCTGAAGAAAAAGGTGGGAGTGCTAACAGACTTAGATCGCTGAAAACTCTACCAACCAAATCTACTCCAGTTTACTCATTGCGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGTGCTCTATCAAAAAGTGGCTAA

>Glyma06g06570.2   sequence type=CDS   gene model=Glyma06g06570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTTGTCGCCAAAGGACATGTTCAAGAAGCTCGGAACTTCTTCAATACTTTCCGCGAAGACCATGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGAGTTCTCTCTCCTAATCATCTCAAGGAAATGGAATTTGCTCACTCGCTTAGAAAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTTTTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATCAATGAGCATATTAACTTTCAAGTAACCCCTGGTCAACCTAGCTTAATTTCCGATGATCCGGAAGCTGTTACCCTTACTGGAAGCAGCCAGGAAGCAGCAAACCAGATAAATCAAAAAGAAATTCATTGGGGGTTGCTTGAAGACTCTCTTGAAGAACGGCTGGAGAAAGCCGGGGCCTTGCTTTCAGACTCTGAAAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGAATGACGAGACTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGTGCTTCAGTCAAAAAAGTAAAAAAGGACAAAGGTGGAAGTGCAACTGGAAAAAGTGCAAAACCTGAAGCTAACACCATACCTTCAGCTCCTCGAGTTAAGCCAGAACTCCCTTTGCCCGTAATCCCAGCTGAGGCGGAACAGTCCGTCCTTGAGGATTTAAGGAACCGTGTACAGCTTAGCAGTGTTGCATTGCCATCAGTTAGCTTTTACACATTTATCAATACTCATAATGGTTTAAGCTGTTCTTCAATATCCCATGACGGATCATTGATTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACAACAGACCAGTTCTCTTTCGCAGGGTGAGAATGAACAAATATTTGGGCAAGGTGGTGGGAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGCCCTGTTTATGCAGCCTCTTTTAGTCCTGTCGGAGATTTTATCCTTTCATCCTCAGCAGACTCGACAATTCGATTATGGAGCACAAAACTTAATGCCAATCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTGGGGCATTATTTTGCCAGCTCGTCACATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGATAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGTGTCCGGGTTTTCGTTGGCCACAGGGGTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGCGATGAAGATGGCACAATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTCACACCTTTGATTGGGCACACATCATGTGTCTGGTCCCTCGCTTTCAGTTCTGAAGGTTCTGTGATAGCATCTGGATCTGCTGATTGCACTGTAAAATTGTGGGATGTAAATACGAGCACCAAGGTTTCTAGGGCTGAAGAAAAAGGTGGGAGTGCTAACAGACTTAGATCGCTGAAAACTCTACCAACCAAATCTACTCCAGTTTACTCATTGCGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGTGCTCTATCAAAAAGTGGCTAA

Predicted protein sequences of Glyma06g06570

Limit To All Plant Sequences

>Glyma06g06570.1   sequence type=predicted peptide   gene model=Glyma06g06570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDEKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKSNTSNSVLEPDIANHLLAFSQLETGPARFHDGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPNHLKEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANQINQKEIHWGLLEDSLEERLEKAGALLSDSEKGEGEAKEGENDETKKRSIEGGKQGASVKKVKKDKGGSATGKSAKPEANTIPSAPRVKPELPLPVIPAEAEQSVLEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLGQQQTSSLSQGENEQIFGQGGGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSVIASGSADCTVKLWDVNTSTKVSRAEEKGGSANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKSG*

>Glyma06g06570.2   sequence type=predicted peptide   gene model=Glyma06g06570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPNHLKEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANQINQKEIHWGLLEDSLEERLEKAGALLSDSEKGEGEAKEGENDETKKRSIEGGKQGASVKKVKKDKGGSATGKSAKPEANTIPSAPRVKPELPLPVIPAEAEQSVLEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLGQQQTSSLSQGENEQIFGQGGGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSVIASGSADCTVKLWDVNTSTKVSRAEEKGGSANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKSG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain