Glyma06g06550 - SoyBase

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Report for Sequence Feature Glyma06g06550

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4671367
stop:	4674350
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g06550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25110	AT	Annotation by Michelle Graham. TAIR10: CBL-interacting protein kinase 25 \| chr5:8657740-8659206 REVERSE LENGTH=488	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0583	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24343	Panther	SERINE/THREONINE KINASE	JGI		ISS
PTHR24343:SF45	Panther	SERINE/THREONINE-PROTEIN KINASE PTK1,2/STK1,2	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF03822	PFAM	NAF domain	JGI		ISS
UniRef100_B0I556	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase n=1 Tax=Phaseolus vulgaris RepID=B0I556_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_UPI000233958F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233958F related cluster n=1 Tax=unknown RepID=UPI000233958F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g06550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g06550

Paralog	Evidence	Comments
Glyma04g06520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g06550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g062100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g06550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g06550

Limit To All Plant Sequences

>Glyma06g06550.1   sequence type=CDS   gene model=Glyma06g06550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGTGTCACACGGTGTTCGGAAAGTACGAGATGGGGAGGCTTCTCGGCAAGGGGACGTTTGCCAAAGTGTATTACGGGAAGCAAATAAGCACGGGCGAGAACGTGGCAATCAAAGTGATCAACAAAGAGCAAGTGAGAAAAGAAGGAATGATGGAACAGATCAAACGTGAAATCTCCGTGATGCGTTTGGTGCGACACCCAAACGTGGTGGAAATCAAGGAAGTGATGGCCACAAAGACAAAAATCTTCTTCGTCATGGAATACGTGCGTGGCGGGGAACTCTTCGCCAAAATCTCCAAAGGCAAACTCAAAGAAGATCTCGCCCGCAAGTATTTTCAGCAGTTAATCAGTGCCGTTGATTACTGCCACAGCAGAGGAGTATCCCACCGTGATCTCAAACCAGAGAATCTTCTCCTCGACGAAGACGAAAACCTTAAAATCTCCGATTTCGGTCTCTCTGCGCTGCCGGAACAGCTTCGTTACGATGGGCTCCTCCACACACAGTGCGGCACCCCTGCCTACGTGGCACCCGAAGTGTTAAGAAAAAAAGGCTACGATGGTTCCAAAGCTGATATCTGGTCATGCGGCGTCGTTTTGTATGTTCTTCTCGCTGGCTTTCTTCCTTTCCAACACGAGAATCTCATGACGATGTATAACAAAGTTCTCAGAGCCGAGTTTGAGTTTCCACCGTGGTTTTCGCCTGATTCGAAGAGGCTAATCTCCAAGATTCTAGTGGCGGATCCCTCGAAGAGGACCGCGATTTCCGCCATAGCTCGCGTGTCGTGGTTCCGGAAGGGCTTTTCTTCGCTTTCCGCGCCGGACTTGTGTCAGTTGGAGAAACAAGAAGATGCCGTTACGGTTACGGTTACGGAGGAAGAGAATAATTCCAAGGTCCCCAAGTTCTTCAACGCGTTCGAGTTTATTTCTTCGATGTCTTCCGGGTTTGATCTCTCGGGGCTGTTTGAGAGTAAGCGGAAGACAGCGACGGTGTTCACGTCGAAGTGTTCGGCGGCGGCGATTGTGGCGAAGATTGCGGCGGCGGCGCGGGGGCTGAGTTTCCGCGTGGCGGAGGTTAAGGACTTCAAGATCCGGCTGCAGGGCGCGGCGGAGGGGAGGAAAGGGAGGCTGGCGGTCACGGCTGAGGTGTTCGAGGTGGCGCCGGAGGTCGCCGTTGTTGAGTTTTCGAAGTCCGCCGGCGACACGTTGGAATACGCGAAGTTCTGTGAGGAGGACGTGAGGCCCGCGCTGAAGGACATTGTTTGGACGTGGCAAGGGGATGCCACGTGTGCTGCTAACGTTCCCGCCTGTCACGGTGAGGAGTGTCATAAGCAGGTGAAAGAGCACGACAGAGGAGTAATATTTGTATTAAGATTAATGAATGTCTACAACAAGGAGTATATATAA

Predicted protein sequences of Glyma06g06550

Limit To All Plant Sequences

>Glyma06g06550.1   sequence type=predicted peptide   gene model=Glyma06g06550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEECHTVFGKYEMGRLLGKGTFAKVYYGKQISTGENVAIKVINKEQVRKEGMMEQIKREISVMRLVRHPNVVEIKEVMATKTKIFFVMEYVRGGELFAKISKGKLKEDLARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDEDENLKISDFGLSALPEQLRYDGLLHTQCGTPAYVAPEVLRKKGYDGSKADIWSCGVVLYVLLAGFLPFQHENLMTMYNKVLRAEFEFPPWFSPDSKRLISKILVADPSKRTAISAIARVSWFRKGFSSLSAPDLCQLEKQEDAVTVTVTEEENNSKVPKFFNAFEFISSMSSGFDLSGLFESKRKTATVFTSKCSAAAIVAKIAAAARGLSFRVAEVKDFKIRLQGAAEGRKGRLAVTAEVFEVAPEVAVVEFSKSAGDTLEYAKFCEEDVRPALKDIVWTWQGDATCAANVPACHGEECHKQVKEHDRGVIFVLRLMNVYNKEYI*

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