SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| KOG3603 | KOG | Predicted phospholipase D | JGI | ISS | |
| PTHR10185 | Panther | PHOSPHOLIPASE D - RELATED | JGI | ISS | |
| PTHR10185:SF6 | Panther | MAJOR ENVELOPE PROTEIN - RELATED | JGI | ISS | |
| PF08371 | PFAM | Phospholipase D/viral envelope | JGI | ISS | |
| UniRef100_G7J9U5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase D4 n=1 Tax=Medicago truncatula RepID=G7J9U5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339EA6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339EA6 related cluster n=1 Tax=unknown RepID=UPI0002339EA6 | SoyBase | E_val: 0 | ISS |
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Glyma06g06475 not represented in the dataset |
Glyma06g06475 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g06435 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g061500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g06475.1 sequence type=CDS gene model=Glyma06g06475 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGACACACTCCGAAGATTGGTGTTCACGGTGTCTTTGTGTGTTATAATATATTGGTATTGTTGTTGAGCAGTTTTCATGAATCAACATCATCCTCTTCCCACTGTAAAGCATGGTTAGTGCAATCCATTCCCACCGATATGCCCCACTTATCCCATGTTCCAGGCACCCTCTCTACTGGGGATGTACTTCGGTGGCTGGCTGCAAACTCCACCACGAGGCTTCACATAATTGCTCAGTACTGGCAGCTGTTACCTTCTCCCAACGATCCTCGCTCTGGGGACTATGGTTACACTCAGCATCAGATGCATGAATTTGGTGCCGATCAGGGTGTTTCCCTTTATCAAGCATTAGATGCTGCTGCTGACCGCAATGTTAGCATCAGGTTACTGTCCCACTCTGGAGTGTATCCAACTTTTGCCTCAGAACCATCCAAACTTGCTTTCGGAAGGCCTAATGTTGAGAACGTGACATTGCTACTTGAGGATTGGTGGGGCTCCGGCATTGTCCATGCCAAAGTTTGGATATCTGATAGTAGGGATGTGTATATTGGATCTGCAAACAATGACTGGAAATCTCTTACACAGGTCAAGGAACTGGGAATTTATTTTGCTGATTGTCCTGAAATAGCTAAAAGGGTTGAGGTCTACTTTGACAATTTATGGACACTAGCATCTCTTAATTCTTCAGCTTACACAAAAACAGTGTTTGATCAAGACTGGCAAGTTGAGAGAAAGGTTCCTTGCTGGTCGCATTTCATTAATCATAGAGAGAGGTGCAAGTCGCCTCTCCCACAATATCTGGAGACACCTCATATTGCAGGATATCCTATTCTGTCTGAGCCTTATATGTTTAAGGTTCCATTTCAAACTCCTGGGAGTAACTATTCAACAAAGCACCCCCAAGGCAGCTATCTATCATTTGCACCCCCAGAGCTATTATTTGGCAAATATCAGGCTGATGAGCATGCATGGATTGATACAATCAAGTCTGTTGGAAAGAAAGAAACAGTTAGAATCAGTACCATGGACTGGCTAGGTCAGTCAGAATTTATAGACCAAACAATTTACTGGTCATCCTTATCCTCTGCAACATCACAGGTGGTGTTTTCCAAGAATGCAACAGTGCAGATATTGGTAGCATATTGGTCACACTCCATCAGTAACACAGATTCGTACCTGAATTCTCTCCTCTACACCAACAATCTCTGCTCTTCCTCAAAATACAACACATGCTCAGGGAAAGTTGAGATAAAATATTATGTGGTTCCAGGTTTCAACATGACAGGACCTGCCATTAAGGGTGGAAATAGAACAGGTAACATATACCCTGATTTTACCAGAGTGAATCATGGAAAATATGCAGTTAGTGATGTAAGAGCACACATTGGAACTAGCAATCTTGTATGGGACTACTTCTACACAACAGCAGGTGTCAGCCTTGGGACACACAACACTGCCATCATCTCTCAACTTAGGGAAATTTTTAATGCTGATTGGAACTCACCCTATGCTGTTCCATTTGAAGAGATGGAGAACGTTCATACAAGAAGTTCAATCTAA
>Glyma06g06475.1 sequence type=predicted peptide gene model=Glyma06g06475 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRHTPKIGVHGVFVCYNILVLLLSSFHESTSSSSHCKAWLVQSIPTDMPHLSHVPGTLSTGDVLRWLAANSTTRLHIIAQYWQLLPSPNDPRSGDYGYTQHQMHEFGADQGVSLYQALDAAADRNVSIRLLSHSGVYPTFASEPSKLAFGRPNVENVTLLLEDWWGSGIVHAKVWISDSRDVYIGSANNDWKSLTQVKELGIYFADCPEIAKRVEVYFDNLWTLASLNSSAYTKTVFDQDWQVERKVPCWSHFINHRERCKSPLPQYLETPHIAGYPILSEPYMFKVPFQTPGSNYSTKHPQGSYLSFAPPELLFGKYQADEHAWIDTIKSVGKKETVRISTMDWLGQSEFIDQTIYWSSLSSATSQVVFSKNATVQILVAYWSHSISNTDSYLNSLLYTNNLCSSSKYNTCSGKVEIKYYVVPGFNMTGPAIKGGNRTGNIYPDFTRVNHGKYAVSDVRAHIGTSNLVWDYFYTTAGVSLGTHNTAIISQLREIFNADWNSPYAVPFEEMENVHTRSSI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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