SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G25080 | AT | Annotation by Michelle Graham. TAIR10: Sas10/Utp3/C1D family | chr5:8643782-8646306 FORWARD LENGTH=217 | SoyBase | E_val: 4.00E-73 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4835 | KOG | DNA-binding protein C1D involved in regulation of double-strand break repair | JGI | ISS | |
| PTHR15341 | Panther | SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR | JGI | ISS | |
| PTHR15341:SF3 | Panther | SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR | JGI | ISS | |
| PF04000 | PFAM | Sas10/Utp3/C1D family | JGI | ISS | |
| UniRef100_G7J9T9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclear nucleic acid-binding protein C1D n=1 Tax=Medicago truncatula RepID=G7J9T9_MEDTR | SoyBase | E_val: 4.00E-103 | ISS |
| UniRef100_I1K8L9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8L9_SOYBN | SoyBase | E_val: 4.00E-151 | ISS |
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Glyma06g06440 not represented in the dataset |
Glyma06g06440 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g061100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g06440.2 sequence type=transcript gene model=Glyma06g06440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTTAAAAGACGAACTAAGGAGTGGCTGCTGGGCGAACCCAACCAGTCTCTGTATTCTTCCACTCTTTTGTAATTGTGGCTGTGGTATCCCTTTCTCTCCAACCTCTGAATTTGAAAATGGTGAAAGGAAGTGAGAGCGGTGCAGTTCCCGAACCGGTTATGGATTCAGTCAACACCACTCTCTCCAACCTTCAACAACTCCGAACGCACTTTAACGAGTTTTTGTCTCTCTCCGACCCTCAAACCCTCTCCCAAATGCCCCCTCTTCAACGGGCTCATTCCCTCTTCATCCTCGCCAAAGTCACATCTACCCTTCTTGCATTGAACCTAAGGTGTACCGGGGTCCACCCAGATGATCATCCCATCAAATCAGAGCTTGATAGGGTAAGCTTGTACGAGGACAAACTGGAACGTTTGCTTGATTTGAGTAAAGCTCCATTGCGACCTTCTACTACCTTGAATTATCAGGCAGCTACACGCTTCATAGAACACTCTCTGCCTGACCTAACAACAGAGCAGAGGGAAAATATGAGGAACATTAGTAGAGGGGAGAGACCAAAGACAAACCGTCTGGGTCAAGCAGGTCAAAAGAGGAAGTATCAATCGTCCGAAAAACCATCTGTTCAAGCGGCTGCCAAGGAGTTTCTTCAGAAAGCAGCCCGGGAGCTTCTGGGTGATAACAGTGGCGGTATTAAGGGACCGTTACAAGTTGACATTTTGGATAATGATGATGATGAACTGCCTTTGCCCTGATTTTCCTGAAATTTGGTAGAGTTTCTCATGATGTTCTTGTTTACTTTGAGTTTAATATCCCAACTCCCATGATATATGTCTTTTGCTATAGTAACTGTGGTGCGGATGTGATCTATAATTTAGGAATTTTCTCTTATCTGCATTAGAATGAAATTTGAAAAAGAAAAAAAAAACATTTTAGGAATTTTCTCTTATCTGAATTTGACTACTTTTACAGCGAACTTTTATTTAATTATTAAATAGTTGACACTGAATATTTGTCTTTCAAGATCGATCTGATTTTCAACATGTGCTGCCTATCTGTTTAGTGTAACCGTAAGTTGTCATCAGTAAGCCTTTTTAATTTAATAAAAGAATTGGTAATATCAATTTCAAAATTCTTG
>Glyma06g06440.1 sequence type=CDS gene model=Glyma06g06440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAAAGGAAGTGAGAGCGGTGCAGTTCCCGAACCGGTTATGGATTCAGTCAACACCACTCTCTCCAACCTTCAACAACTCCGAACGCACTTTAACGAGTTTTTGTCTCTCTCCGACCCTCAAACCCTCTCCCAAATGCCCCCTCTTCAACGGGCTCATTCCCTCTTCATCCTCGCCAAAGTCACATCTACCCTTCTTGCATTGAACCTAAGGTGTACCGGGGTCCACCCAGATGATCATCCCATCAAATCAGAGCTTGATAGGGTAAGCTTGTACGAGGACAAACTGGAACGTTTGCTTGATTTGAGTAAAGCTCCATTGCGACCTTCTACTACCTTGAATTATCAGGCAGCTACACGCTTCATAGAACACTCTCTGCCTGACCTAACAACAGAGCAGAGGGAAAATATGAGGAACATTAGTAGAGGGGAGAGACCAAAGACAAACCGTCTGGGTCAAGCAGGTCAAAAGAGGAAGTATCAATCGTCCGAAAAACCATCTGTTCAAGCGGCTGCCAAGGAGTTTCTTCAGAAAGCAGCCCGGGAGCTTCTGGGTGATAACAGTGGCGGTATTAAGGGACCGTTACAAGTTGACATTTTGGATAATGATGATGATGAACTGCCTTTGCCCTGA >Glyma06g06440.2 sequence type=CDS gene model=Glyma06g06440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAAAGGAAGTGAGAGCGGTGCAGTTCCCGAACCGGTTATGGATTCAGTCAACACCACTCTCTCCAACCTTCAACAACTCCGAACGCACTTTAACGAGTTTTTGTCTCTCTCCGACCCTCAAACCCTCTCCCAAATGCCCCCTCTTCAACGGGCTCATTCCCTCTTCATCCTCGCCAAAGTCACATCTACCCTTCTTGCATTGAACCTAAGGTGTACCGGGGTCCACCCAGATGATCATCCCATCAAATCAGAGCTTGATAGGGTAAGCTTGTACGAGGACAAACTGGAACGTTTGCTTGATTTGAGTAAAGCTCCATTGCGACCTTCTACTACCTTGAATTATCAGGCAGCTACACGCTTCATAGAACACTCTCTGCCTGACCTAACAACAGAGCAGAGGGAAAATATGAGGAACATTAGTAGAGGGGAGAGACCAAAGACAAACCGTCTGGGTCAAGCAGGTCAAAAGAGGAAGTATCAATCGTCCGAAAAACCATCTGTTCAAGCGGCTGCCAAGGAGTTTCTTCAGAAAGCAGCCCGGGAGCTTCTGGGTGATAACAGTGGCGGTATTAAGGGACCGTTACAAGTTGACATTTTGGATAATGATGATGATGAACTGCCTTTGCCCTGA
>Glyma06g06440.1 sequence type=predicted peptide gene model=Glyma06g06440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVKGSESGAVPEPVMDSVNTTLSNLQQLRTHFNEFLSLSDPQTLSQMPPLQRAHSLFILAKVTSTLLALNLRCTGVHPDDHPIKSELDRVSLYEDKLERLLDLSKAPLRPSTTLNYQAATRFIEHSLPDLTTEQRENMRNISRGERPKTNRLGQAGQKRKYQSSEKPSVQAAAKEFLQKAARELLGDNSGGIKGPLQVDILDNDDDELPLP* >Glyma06g06440.2 sequence type=predicted peptide gene model=Glyma06g06440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVKGSESGAVPEPVMDSVNTTLSNLQQLRTHFNEFLSLSDPQTLSQMPPLQRAHSLFILAKVTSTLLALNLRCTGVHPDDHPIKSELDRVSLYEDKLERLLDLSKAPLRPSTTLNYQAATRFIEHSLPDLTTEQRENMRNISRGERPKTNRLGQAGQKRKYQSSEKPSVQAAAKEFLQKAARELLGDNSGGIKGPLQVDILDNDDDELPLP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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