Glyma06g06390 - SoyBase

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Report for Sequence Feature Glyma06g06390

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4569396
stop:	4571062
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g06390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G24940	AT	Annotation by Michelle Graham. TAIR10: membrane-associated progesterone binding protein 2 \| chr2:10609447-10609749 FORWARD LENGTH=100	SoyBase	E_val: 9.00E-56	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
PTHR10281	Panther	MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-RELATED	JGI		ISS
PF00173	PFAM	Cytochrome b5-like Heme/Steroid binding domain	JGI		ISS
UniRef100_B9RNT1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Steroid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNT1_RICCO	SoyBase	E_val: 2.00E-54	ISS
UniRef100_I1K8L5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8L5_SOYBN	SoyBase	E_val: 6.00E-76	ISS

Expression Patterns of Glyma06g06390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g06390

Paralog	Evidence	Comments
Glyma04g06340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g06390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g060400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g06390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g06390

Limit To All Plant Sequences

>Glyma06g06390.1   sequence type=CDS   gene model=Glyma06g06390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCGATCGATCATCTCCTCTGCGAAATACAATGGAGCTGACAGCCCAGCAGCTGAGCCAATACAACGGCACTGACCCATCGAAGCCGATCTACGTGGCGGTGAAAGGCCGAGTCTACGACGTTACCTCCGGAAAATCCTTCTACGGCCCCGGCGGCCCCTACGCCATGTTCGCCGGCAAAGACGCCAGCAGGGCCCTCGCCAAGATGAGCAAGAACGACGAAGACATCTCCCCCTCCCTCGACGGCCTCTCCGACAAGGAGATCGGCGTTCTCAACGACTGGGAGAACAAATTCCAAGCTAAGTACCCTGTCGTTGCTCGTCTTCTCAATTAA

Predicted protein sequences of Glyma06g06390

Limit To All Plant Sequences

>Glyma06g06390.1   sequence type=predicted peptide   gene model=Glyma06g06390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCDRSSPLRNTMELTAQQLSQYNGTDPSKPIYVAVKGRVYDVTSGKSFYGPGGPYAMFAGKDASRALAKMSKNDEDISPSLDGLSDKEIGVLNDWENKFQAKYPVVARLLN*

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