Glyma06g06360 - SoyBase

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Report for Sequence Feature Glyma06g06360

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4559635
stop:	4562105
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g06360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31770	AT	Annotation by Michelle Graham. TAIR10: debranching enzyme 1 \| chr4:15370296-15372422 REVERSE LENGTH=418	SoyBase	E_val: 3.00E-106	ISS
GO:0006397	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA processing	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0008419	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA lariat debranching enzyme activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
PTHR12849	Panther	RNA LARIAT DEBRANCHING ENZYME	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
PF05011	PFAM	Lariat debranching enzyme, C-terminal domain	JGI		ISS
UniRef100_G7J9S6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lariat debranching enzyme n=1 Tax=Medicago truncatula RepID=G7J9S6_MEDTR	SoyBase	E_val: 3.00E-137	ISS
UniRef100_I1K8L1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K8L1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g06360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g06360

Paralog	Evidence	Comments
Glyma04g06310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g06360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma06g06360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g06360

Limit To All Plant Sequences

>Glyma06g06360.1   sequence type=CDS   gene model=Glyma06g06360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGTGGAAAGGTGCATGCACGGTGACCTGGACAATGTGTACAGAACCCTTCAACAGTTGGAGAAATTCGAAAACACGAAAATCGACCTCCTCCTCTGCTGAGGCGATTTCCAAGCCTACTGTTCCGGCGCCGAGGTCGCCCCCTACCCACCATCTTCATTGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACTGTTGAGGTTTCGCTGCGTTTATTTATATTGTGGGAAATTATGGACAAATGCGGCTTATGCAGCCAAAATTACTGTTGCAGACTGTACTATGGAGGATGGGCTGCTCCTAATATATACATCTTGAGAGCTGCTGGGGTGGTGAGGTTTGGGAATTTTCGAATTGGTGGCCTCTCTGGGATTTATAAATCTTTCGACTATAAATTAGGACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCTGTGTATCATGTTTGCGAATATGATGTTCGCAAACTGATGCAAGTCAAGGAGCTAATTGATGTTTTTCTTTCGCATGATTGGCCCGTGAGAATCACTGATCATGGGGATTGGAGGGAGCTTATAGAGGAAAAAAGACTAGGTAGTAAACCTGCTGCTGAACTTCTAGAAAAATTGAAACCACATTATTGGTTTTCAGCTCACTTACACTGCAAATTTGCTACTCTTGTTCAACATGGGGAAGGAGGTCCACTGACAAAATTTCTTGTACTGGATAAATGTATTGCTGGGTGTGATTTCTTACAGATTGTGGAAATTGAATCAGATGCAGGACCTTATGAGATTCAGTGCGATGAAGAATGGTTAGCAATAACACGGAAGTTCAACCATATATTCCCTTTGACTTACAAAGGTGCAGACTTCAGAGGGATAAATCTTGAGATGGAAGATTGTCTTGAATGGGTTAGAAGCAGGCTACAAGAGAGGGGGTGCAAACCTTTTGAATTTGTTAGATCAGCTCCATTGAATCCTCAAAATCCTCAGACAGAATCTTTTTTGCGGCTTCTGGAACTTCCATATCTTCTTGATAGGAATCCTGAAGCAAAGGAC

Predicted protein sequences of Glyma06g06360

Limit To All Plant Sequences

>Glyma06g06360.1   sequence type=predicted peptide   gene model=Glyma06g06360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
WWKGACTVTWTMCTEPFNSWRNSKTRKSTSSSAEAISKPTVPAPRSPPTHHLHWRQPRSFQLSLGTVEVSLRLFILWEIMDKCGLCSQNYCCRLYYGGWAAPNIYILRAAGVVRFGNFRIGGLSGIYKSFDYKLGHFERPPYDHNTIKSVYHVCEYDVRKLMQVKELIDVFLSHDWPVRITDHGDWRELIEEKRLGSKPAAELLEKLKPHYWFSAHLHCKFATLVQHGEGGPLTKFLVLDKCIAGCDFLQIVEIESDAGPYEIQCDEEWLAITRKFNHIFPLTYKGADFRGINLEMEDCLEWVRSRLQERGCKPFEFVRSAPLNPQNPQTESFLRLLELPYLLDRNPEAKD

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