Report for Sequence Feature Glyma06g06340
Feature Type: gene_model
Chromosome: Gm06
Start: 4547047
stop: 4548672
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g06340
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G10750 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1336) | chr5:3399072-3399980 FORWARD LENGTH=302
SoyBase E_val: 7.00E-155 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF07059 PFAM
Protein of unknown function (DUF1336)
JGI ISS
UniRef100_E4MXX3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-25-G03 n=1 Tax=Eutrema halophilum RepID=E4MXX3_THEHA
SoyBase E_val: 2.00E-151 ISS
UniRef100_I1K8K9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8K9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g06340
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g06340
Paralog Evidence Comments
Glyma04g06280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g06340 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g060000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g06340
Coding sequences of Glyma06g06340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g06340.1 sequence type=CDS gene model=Glyma06g06340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACAACAACACATGAGCGCGTGCATCCAATCCCAAACCTAGCTATGTCTCCCACCACTTCCTCCTCCACCGCCCACTGGACCTCCGACGCCATACACGGCGGATCCCTCCGCCGCGTCGACCTCGACTCCGGCACCAACGGCTGGGCCTCTCCTCCCGGCGACCTTTTCCTCCTCCGCTCTTCCAATTACTTCACAAAACGCCAAAAATCCCCCGCCGGCGACTACCTCCTCTCCCCGGCCGGCATGGACTGGCTGAAATCCCAATCCAAGCTCGAGAACGTGCTCTCCCGGGCCGACAACCGCGTGGGCCAGGCCCTTCGCCAGGCCCAAGCACAAGGAAAATCCCTGAAAAGCTTCATCTTCGCAGTCAACCTCCAAGTCCCTGGAAAAGAACACCACAGCGCGGTCTTCTACTTTTCAACCGACGAACCCATCCCCTCCGGTTCGCTCCTCTCCCGGTTCATCGAGGGCGACGACGCCTTTCGGAACCAGCGGTTCAAGCTCGTGAACCGGATCGTGAAGGGTCCATGGATAGTTAAAAAAGCGGTGGGGAATTACAGCGCGTGCTTATTGGGGAAGGCGCTGACGTGTAACTATCACAGGGGAAGGAACTACTTCGAGATTGACGTGGACATTGGGAGCAGCGCCATCGCCAACGCTATCCTGCGCCTCGCGCTGGGCTATGTCACCAGCGTCACCATCGATATGGGGTTTCTTGTGGAGGCGCAAGACGAGGAGGAGCTGCCGGAGAGGCTCGTCGGAGCGGTTAGGGTTTGCCAGATGGAGATGTCCGCCGCCACAGTCGTCGATGCACCCAACGCGCCGCGCGGTAACAAGGTCAATCACCTTAGTGGTAACGACGAGTAA
Predicted protein sequences of Glyma06g06340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g06340.1 sequence type=predicted peptide gene model=Glyma06g06340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTTTHERVHPIPNLAMSPTTSSSTAHWTSDAIHGGSLRRVDLDSGTNGWASPPGDLFLLRSSNYFTKRQKSPAGDYLLSPAGMDWLKSQSKLENVLSRADNRVGQALRQAQAQGKSLKSFIFAVNLQVPGKEHHSAVFYFSTDEPIPSGSLLSRFIEGDDAFRNQRFKLVNRIVKGPWIVKKAVGNYSACLLGKALTCNYHRGRNYFEIDVDIGSSAIANAILRLALGYVTSVTIDMGFLVEAQDEEELPERLVGAVRVCQMEMSAATVVDAPNAPRGNKVNHLSGNDE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
