Glyma06g06310 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g06310

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4519859
stop:	4524350
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g06310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31750	AT	Annotation by Michelle Graham. TAIR10: HOPW1-1-interacting 2 \| chr4:15364657-15367207 REVERSE LENGTH=311	SoyBase	E_val: 0	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0044419	GO-bp	Annotation by Michelle Graham. GO Biological Process: interspecies interaction between organisms	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein serine/threonine phosphatase complex	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF186	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_G7J977	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2C n=1 Tax=Medicago truncatula RepID=G7J977_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K8K7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8K7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g06310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g06310

Paralog	Evidence	Comments
Glyma04g06250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g06310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g059700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g06310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g06310

Limit To All Plant Sequences

>Glyma06g06310.1   sequence type=CDS   gene model=Glyma06g06310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTATCTCAATTCAGTTTTGTCATCTTCAAGCGAGGTTCATGCTGCAGGTGATGCAATTGCGAGTGGTGGGGGGCTAAGTCACAATAGAAAATTCAGCTATGGGTATGCTAGCTCTCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGATGGTGAAGTCGTTGGCCTTTTCGGAGTTTTTGATGGTCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGAAAAACCTGTTTAGTAATTTAATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAACTGATGCATATAATCATACCGATTCTGAGTTGCTGAAATCAGAAAATAGCCATAATAGAGATGCTGGATCAACTGCTTCCACTGCTATTTTAGTTGGTGACCGCTTGCTTGTTGCAAATGTTGGGGATTCCAGAGCTGTTATATGCAGGGGTGGTAATGCCATTGCTGTTTCTCGAGATCACAAGCCTGACCAAACTGATGAGAGGCAAAGGATTGAAGAAGCAGGAGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGTGCGTTTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATTCAGGAAGAAAAAATTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCACAAATGAGGAAGCTGTTGCTATGATTAAATCAATTGAGGATGCTGAGGAGGCAGCAAAGAGGCTGATGCAAGAAGCATATCAGAGAGGTAGTGCTGACAATATCACATGTGTTGTCGTTCGTTTCTTGATGAACCAAGGTGGATCCAAAGACAAAGAGGTAGTAGCTCCTCCTCATAATAGTAGCTCTGCCAGTAGGAATCCTTCAGTAGAAGGTTTGTGTGATAGGTGA

Predicted protein sequences of Glyma06g06310

Limit To All Plant Sequences

>Glyma06g06310.1   sequence type=predicted peptide   gene model=Glyma06g06310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGYLNSVLSSSSEVHAAGDAIASGGGLSHNRKFSYGYASSPGKRSSMEDFYETRIDGVDGEVVGLFGVFDGHGGARAAEYVKKNLFSNLISHPKFISDTKSAITDAYNHTDSELLKSENSHNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEEAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVTNEEAVAMIKSIEDAEEAAKRLMQEAYQRGSADNITCVVVRFLMNQGGSKDKEVVAPPHNSSSASRNPSVEGLCDR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain