Glyma06g06280 - SoyBase

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Report for Sequence Feature Glyma06g06280

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4486483
stop:	4492040
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g06280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10730	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr5:3390822-3392947 REVERSE LENGTH=287	SoyBase	E_val: 2.00E-93	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG4288	KOG	Predicted oxidoreductase	JGI		ISS
PTHR12126	Panther	NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED	JGI		ISS
PTHR12126:SF2	Panther	UNCHARACTERIZED	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_G7J970	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAD dependent epimerase/dehydratase family protein n=1 Tax=Medicago truncatula RepID=G7J970_MEDTR	SoyBase	E_val: 3.00E-97	ISS
UniRef100_I1K8K5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K8K5_SOYBN	SoyBase	E_val: 3.00E-154	ISS

Expression Patterns of Glyma06g06280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g06280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma06g06280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g06280

Limit To All Plant Sequences

>Glyma06g06280.2   sequence type=CDS   gene model=Glyma06g06280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGACAGTGCTTTCGCGCTTGATCCATTCCACGCCTTCCATTTCCAGGCTCAAGTATGCTTTCTGTCTTTTCACTTTTATTCCCTTTTTCCTTTTTAACCGTTATGTTCCGTTAGCGTGTCGTTTTTCGTTCTATGCTCAATTCGACGCGATTGCTGTGTTGGGAGGCAATGGGTTTGTTGGATCACACATTTGTAGAGAAGCCCTAGATCGTGGCTTGTCTGCTGGGAGTCCTACCAGGTCTGGTAGGCCATCCCTGCATGATTCCTGGGCTATGGAATTTGCTTGGCATTTGGGGAATCTCTTTTCAACTGCTTCATTGAGAAAACATCTGAATGGGGCCACTGCTGTTATCTCATGTGTTGGTGGTTTTGGCTCCAACTCGTACATGTACAAAATTAATGGGACGGCTAACATCAAAGCTATTAGAGCAGCTTCAGATCAAGGTGTTAAAAGATTTGTCTATATCTCTACTGCTGACTTTGGTGTAGTTAATTACTTACTGCAGGGCTGTAATATAGGAAAGAGAGCTGCTGAAACAGAGCTTCTGACCAGATTTCCATTTGGAGGAGTAATTCTGAGGCCAGGATTAATTTATGGGACTCGAATTGTTTCAGCTCCATTGGAAATGGTTCTCCGAGTTGCTAAACCATCGAACCATATCCCATTTGTTGGGCCTCTGTTGACACCTCCTGATGCGGTGGCAAAAGTTGCTGTTACAGCTGCTACGGCTACTGATCCTGTATTTCCCCCGGGGATCATTGACGCCAATGGAATACAACGTTTACTGTCAGAATAA

Predicted protein sequences of Glyma06g06280

Limit To All Plant Sequences

>Glyma06g06280.2   sequence type=predicted peptide   gene model=Glyma06g06280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTVLSRLIHSTPSISRLKYAFCLFTFIPFFLFNRYVPLACRFSFYAQFDAIAVLGGNGFVGSHICREALDRGLSAGSPTRSGRPSLHDSWAMEFAWHLGNLFSTASLRKHLNGATAVISCVGGFGSNSYMYKINGTANIKAIRAASDQGVKRFVYISTADFGVVNYLLQGCNIGKRAAETELLTRFPFGGVILRPGLIYGTRIVSAPLEMVLRVAKPSNHIPFVGPLLTPPDAVAKVAVTAATATDPVFPPGIIDANGIQRLLSE*

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