Glyma06g06250 - SoyBase

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Report for Sequence Feature Glyma06g06250

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4476628
stop:	4482599
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g06250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10730	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr5:3390822-3392947 REVERSE LENGTH=287	SoyBase	E_val: 4.00E-123	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG4288	KOG	Predicted oxidoreductase	JGI		ISS
PTHR12126	Panther	NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED	JGI		ISS
PTHR12126:SF2	Panther	UNCHARACTERIZED	JGI		ISS
UniRef100_D7M301	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Catalytic/ coenzyme binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M301_ARALL	SoyBase	E_val: 2.00E-123	ISS
UniRef100_UPI0002339EA1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339EA1 related cluster n=1 Tax=unknown RepID=UPI0002339EA1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g06250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g06250

Paralog	Evidence	Comments
Glyma04g06210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g06250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma06g06250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g06250

Limit To All Plant Sequences

>Glyma06g06250.1   sequence type=CDS   gene model=Glyma06g06250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGACAGTGCTTTCGCGCTTGATCCATTCCACGCCTTCCATTTTCAGGATCAATGCCACGGTAGTGTCAATCAGCGGGAGAAATCTCTGCACAGATTCTAACAAAGTTCATGAACCCTTTAAAGTTGAAGAAGCAGAGACTGTAAATGTGCCTCCACCCCCAACGGAAAAGTTGGTTGTGTTTGGAGGCAATTTTTTTGTTGGAATCAACATTCTTATGGAAGCCCAAAATCGTGGCATGTGTGCTGGGAGTCCTACCAGGGATGATGGTAGGTCATCCCTGCATGATTCCTGGGCTAGGAATTTTGCTTGGTATCAAGGGAATCTCTTTTCAACTGCTACATTGAGAAAACATCTGAATGGGGCCACTGCTGTTATCTCATTTATGAGTGGTTTTGGCTCCAACATCAATGCTATTAGAGCAGCTTCAGATCAAGGTGTTAAAAGATTTGTCTATATCTCTACTGCTGACTTTGGTGTAGTTAATTACTTACTGCAGGGCTGTAATATAGGAAAGAGAGCTGCGGAAACAGAGCTTCTGACCAGATTTCCATTTGGAGGAGTAATTCTGAGGCCAGGATTTATTTATGGGACTCGAAGTTTTGGGAGTATGAAGATACCCCTTGGTGTAGTTGGATCTCCATTGGAAATGGTTCTCCAAGTTGCTAAACCATTGAACCAGATCCCGCTTGTTGGGCCTCTGTTGACACCTCCTGTCAATGTTACTGCGGTGGCAAAAGTTGCTGTTAGAGCTGCTACTGATCCTGTATTTCCCCCGGGGATCATTGACGCCTATGGAATACAACGTTACAGTCAGAATAAATCAAACTAG

Predicted protein sequences of Glyma06g06250

Limit To All Plant Sequences

>Glyma06g06250.1   sequence type=predicted peptide   gene model=Glyma06g06250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTVLSRLIHSTPSIFRINATVVSISGRNLCTDSNKVHEPFKVEEAETVNVPPPPTEKLVVFGGNFFVGINILMEAQNRGMCAGSPTRDDGRSSLHDSWARNFAWYQGNLFSTATLRKHLNGATAVISFMSGFGSNINAIRAASDQGVKRFVYISTADFGVVNYLLQGCNIGKRAAETELLTRFPFGGVILRPGFIYGTRSFGSMKIPLGVVGSPLEMVLQVAKPLNQIPLVGPLLTPPVNVTAVAKVAVRAATDPVFPPGIIDAYGIQRYSQNKSN*

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