SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45700 | AT | Annotation by Michelle Graham. TAIR10: sterile alpha motif (SAM) domain-containing protein | chr2:18827216-18830505 REVERSE LENGTH=723 | SoyBase | E_val: 0 | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG1361 | KOG | Predicted hydrolase involved in interstrand cross-link repair | JGI | ISS | |
| PTHR23240 | Panther | DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED | JGI | ISS | |
| PTHR23240:SF1 | Panther | DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1 | JGI | ISS | |
| PF00536 | PFAM | SAM domain (Sterile alpha motif) | JGI | ISS | |
| PF07522 | PFAM | DNA repair metallo-beta-lactamase | JGI | ISS | |
| UniRef100_G7J953 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA cross-link repair 1A protein n=1 Tax=Medicago truncatula RepID=G7J953_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339E9E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339E9E related cluster n=1 Tax=unknown RepID=UPI0002339E9E | SoyBase | E_val: 0 | ISS |
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Glyma06g06090 not represented in the dataset |
Glyma06g06090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g058300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g06090.1 sequence type=CDS gene model=Glyma06g06090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTTCCACCATGAGTTGGGATGAGAACAACGATGAATTTGAGATCCCTCTCACTCAAACGACAACGGCTTTTCACGCGGCTCTTGCTTCCATTGATGATGATAATAATCAACGGCCGTCGAAAAAACCTAAACGCAAAACGAGCGAGGGTGGTTGCGAAATTGATAACTGCTGCAGCTTGGATTTCATTCCTTCCACCATAGGTTGTGTTTCTGCTTGCAGTGTTCAACCGTTGGGAGAAGAGGACAGTGTTTCTCCTTCTTCTTCTACTGCGTCTTTGTCGGAGCTGAAAACGAAGGGGAATTATCTTCGCAACTCGATAGAGTCGAAGCTGGTGGTTTCGAGAGCCAACGCGCTTAACCGTGCAGATGCAGACTCTGATTCGGAGCTTGATCTGTTGATGAATTTGTGCGATGAGTTGGAGGAAGTAGATAGTTCCGTTCGGTGTCCCCTGTGTGAGGTTGATATTTCGAACTTGACCGAGGAACAGCGGCATCTTCATACCAACAATTGTCTTGACGACGTTGCGGTGGTTCCTGATGATAACGAGAAAGGTGCTCAACAAGTGCCTAAAGTTGCTTCTGTGGTTGATTGGCTACGCGGGCTCGGCTTAAACAAGTATGAAGATGTTTTCGTTAGGGAAGAAGTTGATTGGGACACCTTGCAGTGGCTCACAGAAGAGGATCTCTTAAGCATGGGTATTGCTGCACTTGGGCCGAGAAGAAAGATTGTGCATGCCCTGAGTGAACTTAGAAAAGGAGATGCTGCTGCAAATGAGAAACATGAGGATTCTTCGGCGGAGCCTAGAAGGATTAGAAACCAGAAAGTCAAATTAAAACATGACAAGTCTGAAAGAAAAGTTGATGGCACTGGTAAACCAGTGGCAAACAAATTAATCACTGAATATTTTCCGGGATTTGCTTCCAAAGAAAAGAAAGTTTCTGCCTCTCCCGGAGAACCACAGGAAAAGAAAAACAGTGGCTTGGATTCTGGTCGTAAGCACAAATCAAAAAATACGCCAACAAATAGAAAGCTCCGTGATGTTCCCAAATGGTGTGCCGTCCAAGGAACGCCTTTCCGAGTGGATGCTTTCAAATATCTCAGAGGAGATTGTTCTCACTGGTTTCTCACACACTTCCACTTGGACCATTATCAAGGTCTCACCAAGTCATTCAATCATGGAAAGATCTATTGCTCCTCAGTTACAGCTAGACTTGTAAATATGAACATTGGAATTCCATATGATAAATTACATGTTTTGCCTCTGAACCAAAAGGTTGAAATAGCTGGTGTTGATGTGACTTGCTTGGATGCCAACCATTGTCCAGGTTCCATAATCATACTCTTTCAACCTCCAAATGGTAAGGCGGTGCTTCACACGGGTGATTTCCGCTTTAGTGAAGAAATGGCTGTCAATCCTTTAATGCGAATATGTCCTATCAATACTCTGATTCTTGATACAACATACTGCAACCCACAGTATGACTTTCCAAAACAAGAGTCTGTAATACAATTCGTTATTGATGCTGTTCAAGCAGAAACTTTTAATCCCAAGACCCTTTTTCTGATCGGCAGCTATACAATTGGCAAAGAAAGATTATTCTTGGAGGTTGCTCGTTCGCTTCGTAAAAAGGTTCACGTTACTGCTGCGAAGTTGCGTATTTTAAAATGTTTGGAATTGAAGGAGGAGGATATGCAGTGGTTCACTTCAAATGAACATGAAAGCAACATTCATGTTGCCCCTATGTGGACGCTGGCGAGCTTCAAAAGATTGAAGCACATATCAAGTCAATATAAGAGTCAGTACAATCTTATAGTTGCTTTCTCTCCCACTGGTTGGACGTTTGGCAAAGGTAAAAAGAAGTCAACGGGAAGGAGATGGCAGCAGGGTACTATTATAAGGTATGAAGTGCCATACAGTGAGCATAGCAGCTTTACAGAACTCAAAGAGTTTGTAAGAGTTGTATCTCCTGATAACATTATACCAAGTGTGAATAATGATGGACCAGAATCTTCTGATGCAATGATTTCTCTGTTGTTATCTTGA
>Glyma06g06090.1 sequence type=predicted peptide gene model=Glyma06g06090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MISTMSWDENNDEFEIPLTQTTTAFHAALASIDDDNNQRPSKKPKRKTSEGGCEIDNCCSLDFIPSTIGCVSACSVQPLGEEDSVSPSSSTASLSELKTKGNYLRNSIESKLVVSRANALNRADADSDSELDLLMNLCDELEEVDSSVRCPLCEVDISNLTEEQRHLHTNNCLDDVAVVPDDNEKGAQQVPKVASVVDWLRGLGLNKYEDVFVREEVDWDTLQWLTEEDLLSMGIAALGPRRKIVHALSELRKGDAAANEKHEDSSAEPRRIRNQKVKLKHDKSERKVDGTGKPVANKLITEYFPGFASKEKKVSASPGEPQEKKNSGLDSGRKHKSKNTPTNRKLRDVPKWCAVQGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSVTARLVNMNIGIPYDKLHVLPLNQKVEIAGVDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSEEMAVNPLMRICPINTLILDTTYCNPQYDFPKQESVIQFVIDAVQAETFNPKTLFLIGSYTIGKERLFLEVARSLRKKVHVTAAKLRILKCLELKEEDMQWFTSNEHESNIHVAPMWTLASFKRLKHISSQYKSQYNLIVAFSPTGWTFGKGKKKSTGRRWQQGTIIRYEVPYSEHSSFTELKEFVRVVSPDNIIPSVNNDGPESSDAMISLLLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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